Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3991g00053 ATGGGAACTCCAGAATTTCCAGATCTAGGCAAGCATTGTGCCCTTGTTGATTGCAAACAGATTGATTTCTTGCCTTTCACATGTGATCGCTGTAATCAGGCATATTGTTTGGAGCACCGAAGTTACATTAAGCATCATTGTACAAAAGCCAACAAACGAGATGTGACTGTTGTTATATGTCCCCTTTGTGCCAAAGGAGTTCGCCTAATTCCAGATCAAGATCCAAATATAACGTGGGAAAAACATGTTGACACTGACTGTGATCCATCAAATTATGAGAAAGTCACAAAGAAGAAAAAGTGCCCGGCCCCATTATGCAGAGAGATCTTGGTATTCTCAAACACAATTAAGTGCAGGGACTGCATGGTGGACCATTGTTTGAAGCACAGGTTTGGACCTGATCACAAATGTTCTGGGCCCAAAAAGTTGGAAACAAGTTTTTCATTTATGAGTCTTTTGAATGGGAGTAGAAAAGAGGCGTCAAAGCCGAATTTAACTTCAACCACGTCATCTAAATGGACTACAAGCTTGCTTAACGTGGCTTCTAATCTTCGAGCTTCAGCTGAAGCTGGCATGACAAAATTGAGTGGTGAAATTAACCAAGCTTGGCAAACAGCAAGGGATGGGGTGGGACAGAGCAGTGGCATTCATGAAAGGAATAGAAACCAATCTAGGGTGAAGAAGGTGACAATTGATGCATGTCCCAAGTGTAGTAGAGGATTTATAGACCCGGTGTCCCTCGTGCAGCATGTTGAGCGGGATCATGGTGGCAGTTCTGGAGCATAA 786 0.4313 MGTPEFPDLGKHCALVDCKQIDFLPFTCDRCNQAYCLEHRSYIKHHCTKANKRDVTVVICPLCAKGVRLIPDQDPNITWEKHVDTDCDPSNYEKVTKKKKCPAPLCREILVFSNTIKCRDCMVDHCLKHRFGPDHKCSGPKKLETSFSFMSLLNGSRKEASKPNLTSTTSSKWTTSLLNVASNLRASAEAGMTKLSGEINQAWQTARDGVGQSSGIHERNRNQSRVKKVTIDACPKCSRGFIDPVSLVQHVERDHGGSSGA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3991g00053 261 ProSitePatterns Zinc finger C2H2 type domain signature. 234 255 IPR013087 -
Gabi3991g00053 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 260 IPR013087 -
Gabi3991g00053 261 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 213 - -
Gabi3991g00053 261 FunFam Zinc finger AN1 domain-containing stress-associated protein 12 86 151 - -
Gabi3991g00053 261 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Gabi3991g00053 261 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Gabi3991g00053 261 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Gabi3991g00053 261 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Gabi3991g00053 261 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Gabi3991g00053 261 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
Gabi3991g00053 261 Gene3D - 2 58 IPR035896 -
Gabi3991g00053 261 Gene3D - 86 152 IPR035896 -
Gabi3991g00053 261 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Gabi3991g00053 261 SUPERFAMILY AN1-like Zinc finger 85 142 IPR035896 -
Gabi3991g00053 261 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3991g00053 Gabi-Chr3991 691515 692882 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3991g00053 1 261 C2H2 Transcription Factor Family AT3G57480 64.368 1.71e-119 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3991g00053 zf-AN1 6.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3991g00053 - - gmx:100786272 426.402