Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3991g00050 ATGGATATTCTGTGCTTGTTGCATCTTCTTCTAGCTTTGTATCTATCAAAATCTGAGCTTGTTGGTGCTGAGTTCCAGGACGAAACTATATTGCATGCCATCAACCAAGAACTTAGAGTTCCTGGATGGGGTGATGCCAACAGCTCAGTTTACTGCAATTGGCAAGGAGTGAGCTGTGGTAATCATGCAATGGTTGAGAAGCTCGATCTCTCTCACCGGAATCTTCGAGGTAATGTAACTTTAATGTCTGAGCTCAAAGCTTTGAAGCGGCTTGACCTTTCAAATAATAACTTTGATGGATTGATTCCTCCTTCTTTTGGAAATTTATCTGATCTTGAAGTTCTAGATTTGTCTTCAAATAAGTTTGAAGGTTCAATTCCACCGCAGTTGGGTGGTCTCAGAAGCCTCAAATCATTAAACCTTTCCAATAACTTGCTTGTGGGAGAAATACCTATGGAACTTCATGGCTTAGAGAAATTGCAGGAGTTTCAAATTTCTGGTAATCATTTGAGTGGTTTTATACCTTCTTGGGTGGGCAATTTGACTAGTCTGAGAGTTTTTACTGCTTATGAGAATCGTTTAGATGGCAGGATTCCAGATAATCTAGGCTTGATTCCTGAGCTTCAAATACTTAACCTGCACTCTAACCAGCTTGAAGGCCCAATACCCGCTAGCATTTTTTCTCCAGGGAAGCTAGAAGTTCTGGTTCTCACCCAGAATAATTTTAGTGGTGATCTTCCTAAGGAAATTGGGAATTGCCAAGCCCTTTCCAATATTCGAATTGGAAACAACCACCTAGCAGGTACTATTCCTAAGACCATTGGAAATCTTAGTAGCCTAACCTACTTTGAAGCTGATAATAATAATCTTTATGGTGAGGTAGTGCCAGAATTTGCTCAGTGTTCTAATCTCACCCTCTTGAATTTAGCTTCAAATGGATTTACTGGAACAATTCCACAAGAATTTGGACAACTTATGAACATTCAGGAGTTAATTCTTTCTGGAAATAGCCTATTTGGTGATATTCCAAAATCAATTTTGAGTTGCAAAAGTCTTAACAAGCTTGATTTTAGCAATAACAGATTCAATGGGACAATACCAAATGAAATCTGCAATATCTCTCGGTTGCAGTACTTGTTATTGGATCAGAATTCCATAAGAGGAGAGATCCCTCATGAAATTGGAAATTGTGCAAAACTTCTTGAATTACAATTGGGCAATAATTATTTGACCGGAATTATCCCTCCTGAAATTGGTCACATTAGGAACTTACAGATAGATTTAAATTTGAGCTTCAATCATCTTTATGGACCACTGCCCCCTGAATTGGGAAGACTGGACAAACTTGTTTCTCTGGATGTTTCAAACAATCGGCTCTCAGGTAATATCCCAGCTGAGCTTAAGGGAATGTTGAGCTTGATAGAGGTGAACTTCTCAAATAATCTGTTTGGAGGCCCTGTACCAACATTCATTCCATTCCAGAAGAGTCCTAGTTCAAGTTTTTTGGGCAATAAAGGGCTTTGTGGAGAGCCATTGAACTCCTCGTGTGAAGATCTTTATGATGATCACAAAAGTTACCATCACAGGGTTTCTTACAGAATCATACTGGCTGTAGTTGGGTCTGTTTTGGCAGTTTTTATGTCAGTAACTATAATTGTCTTGCTGTTTATGATCAGAGAGAGGCAAGAAAAGGTAGCCAAAGATGCTGGGATTGTTGATGAGGGAACTGATGACAAACCAACTATAATAGCAGGGAGTGTTTTTGTTGATAATCTAAGACAAGCAGTAGACCTTGATGCTGTTGTTAAAGCAACTCTGAAAGATTCTAATAAGCTCAGCAGTGGAACTTTCAGCACAGTTTACAAGGCAATCATGCCTTCTGGGGTGGTCTTATCTGTTAGGAGACTGAAGTCCATAGACAAGACAATAATCCACCACCAGAACAAGATGATTAAAGAACTTGAAAGGCTGGGCAAAGTCTGTCATGATAATCTAGTGCGACCCATTGGTTATGTCATTTATGAAGATGTTGCTCTTCTCTTGCATCATTACTTTCCAAATGGAACATTGGCTCAGCTTCTTCATGAATCTACCAGGCAACCTGAATATCAGCCTGACTGGCCTGCTAGGTTATCCATTGCCATTGGAGTGGCAGAAGGTTTGACTTTCCTTCATCATGTGGCAATTATCCATCTTGACATTTCTTCTGGCAATGTTCTTTTGGATGCAAATTTTAAGCCATTGGTTGGCGAGATCGAGATTTCAAAACTTCTAGATCCAACCAGAGGCACTGCAAGTATTAGTGCTGTTGCTGGTTCCTTTGGTTACATACCACCAGAATATGCATATACAATGCAAGTCACAGCACCAGGAAATGTTTATAGCTATGGTGTTGTTCTGTTAGAAATCCTTACAACTCGACAACCAGTTGATGAGGATTTTGGTGAAGGTGTAGATTTGGTGAAGTGGGTTCATAGTGCTCCAGTAAGAGGGGAAACTCCAGAGCAGATACTGGATGCAAGGCTTAGCACAGTTTCCTTTGGTTGGAGGAAAGAAATGCTTGCTGCTCTAAAGGTCGCGTTGCTATGCACTGACAATACACCAGCCAAACGACCAAAAATGAAGAATGTAGTAGAAATGCTTCGAGAGATAAGGCAAAACTGTGGATAG 2670 0.4011 MDILCLLHLLLALYLSKSELVGAEFQDETILHAINQELRVPGWGDANSSVYCNWQGVSCGNHAMVEKLDLSHRNLRGNVTLMSELKALKRLDLSNNNFDGLIPPSFGNLSDLEVLDLSSNKFEGSIPPQLGGLRSLKSLNLSNNLLVGEIPMELHGLEKLQEFQISGNHLSGFIPSWVGNLTSLRVFTAYENRLDGRIPDNLGLIPELQILNLHSNQLEGPIPASIFSPGKLEVLVLTQNNFSGDLPKEIGNCQALSNIRIGNNHLAGTIPKTIGNLSSLTYFEADNNNLYGEVVPEFAQCSNLTLLNLASNGFTGTIPQEFGQLMNIQELILSGNSLFGDIPKSILSCKSLNKLDFSNNRFNGTIPNEICNISRLQYLLLDQNSIRGEIPHEIGNCAKLLELQLGNNYLTGIIPPEIGHIRNLQIDLNLSFNHLYGPLPPELGRLDKLVSLDVSNNRLSGNIPAELKGMLSLIEVNFSNNLFGGPVPTFIPFQKSPSSSFLGNKGLCGEPLNSSCEDLYDDHKSYHHRVSYRIILAVVGSVLAVFMSVTIIVLLFMIRERQEKVAKDAGIVDEGTDDKPTIIAGSVFVDNLRQAVDLDAVVKATLKDSNKLSSGTFSTVYKAIMPSGVVLSVRRLKSIDKTIIHHQNKMIKELERLGKVCHDNLVRPIGYVIYEDVALLLHHYFPNGTLAQLLHESTRQPEYQPDWPARLSIAIGVAEGLTFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRQPVDEDFGEGVDLVKWVHSAPVRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDNTPAKRPKMKNVVEMLREIRQNCG 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3991g00050 889 CDD STKc_IRAK 612 884 - -
Gabi3991g00050 889 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 225 519 - -
Gabi3991g00050 889 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 25 173 - -
Gabi3991g00050 889 ProSitePatterns Tyrosine protein kinases specific active-site signature. 729 741 IPR008266 GO:0004672|GO:0006468
Gabi3991g00050 889 SUPERFAMILY L domain-like 198 521 - -
Gabi3991g00050 889 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 685 888 - -
Gabi3991g00050 889 Gene3D Ribonuclease Inhibitor 228 519 IPR032675 -
Gabi3991g00050 889 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 256 882 - -
Gabi3991g00050 889 ProSiteProfiles Protein kinase domain profile. 606 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3991g00050 889 Pfam Protein tyrosine and serine/threonine kinase 609 881 IPR001245 GO:0004672|GO:0006468
Gabi3991g00050 889 SMART LRR_typ_2 325 349 IPR003591 -
Gabi3991g00050 889 SMART LRR_typ_2 446 469 IPR003591 -
Gabi3991g00050 889 SMART LRR_typ_2 133 156 IPR003591 -
Gabi3991g00050 889 SMART LRR_typ_2 85 108 IPR003591 -
Gabi3991g00050 889 SMART LRR_typ_2 157 181 IPR003591 -
Gabi3991g00050 889 SMART LRR_typ_2 205 229 IPR003591 -
Gabi3991g00050 889 SMART LRR_typ_2 109 132 IPR003591 -
Gabi3991g00050 889 SMART LRR_typ_2 373 397 IPR003591 -
Gabi3991g00050 889 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Gabi3991g00050 889 Gene3D Phosphorylase Kinase; domain 1 578 684 - -
Gabi3991g00050 889 Gene3D Transferase(Phosphotransferase) domain 1 685 888 - -
Gabi3991g00050 889 Gene3D Ribonuclease Inhibitor 25 175 IPR032675 -
Gabi3991g00050 889 PRINTS Leucine-rich repeat signature 88 101 - -
Gabi3991g00050 889 PRINTS Leucine-rich repeat signature 109 122 - -
Gabi3991g00050 889 SUPERFAMILY L domain-like 47 294 - -
Gabi3991g00050 889 SUPERFAMILY Protein kinase-like (PK-like) 606 885 IPR011009 -
Gabi3991g00050 889 Gene3D Ribonuclease Inhibitor 176 227 IPR032675 -
Gabi3991g00050 889 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 576 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3991g00050 Gabi-Chr3991 660463 663422 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3991g00050 1 886 Receptor kinase-like Gene Family AT2G41820 72.054 0.0 1298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3991g00050 PK_Tyr_Ser-Thr 2.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3991g00050 - - gmx:100789684 1581.23