Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3991g00048 ATGGCCGACTCATTTGTCTTTGGTATTGCTGAATCACTGCTAAAGAAGCTTGCTTCTCATGTTTATGAAGAAGCTTCTCGAGCCTATGGTGTGTATGATGATCTGAAAGGGTTTAAAGACACTTTGTTAATTGTCAAAGGAGTCCTATTGGATGCTGAGGAGAGGAAGGCACAAAAGCATGGCTTGCGTGAATGGCTGAGGCAGCTTCATCATGTCTGCTCCGATGCTGAAGATGTATTGGATGGATTTGAGTGCCAAACCTTGCGCAAACAAGTGGTCAAAGCTTCTGGCAGCACCAAGATGAAGGTATGCCACTTCTTTTCCAAGTCTAATCCTCTTGTTTTCCGTATTAGGATGGCTCGTCAAATCAAACAACTTAGGGATAGATTGGATAAGGTAGCTGCTGATGGGAATAAGTTTGGTCTTGTTCATGCGAGGATCGATGTTGACCACAGACTTGTGGTGCAAAGGAGAGAAATGACTTATTCCCATGTTGATGCTTCAAATGTGATAGGAAGGGAGAATGAGAGGGAAAATATTATCCAACTTTTGATGCAACCTCACCCCAATGGTGATGGTGATGGTGATAAAAGCCTCTGTGTCATTCCTATAGTGGGTATAGGAGGCTTGGGGAAGACCACACTTGCAAAGTTGGTATTTAACGATAAGAGGATAGATGAGCTTTTCCCTTTGAAGATGTGGGTGTGTGTCTCTAATGATTTTGACATTAGGCAGATAATTGTCAAAATCATCAATTCGGCTTCAGCTTATGCTCCAACTGCTCTTGCTCATCAAGAAAACATTAGCAACTTGGATATTGAGCAGCTACAAGGTCGTCTTAGACAAAAGCTTTTTGGTCAAAAGTTCTTACTTGTCTTAGATGATATATGGAATGAAGATCGTGCAAAATGGATTGAATTGGAAAGTTTAATAAAAGTTGGCGCAATAGGAAGCAAAGTCATGGTGACAACACGTAATAACTCAATTGCTTCAATGATGGGCAATGTTCGTCCTTGTATTCTAGATGGTCTTTCCCCTGAGAATAGTTTATCCCTATTTGTGAAATGGTCATTTAAAGAAGGCCAAGAAAAAGAACATCCCGATCTAGTGGAAATCGGAAAAGAAATTGTGAAAAAATGCCGAGGGATTCCACTGGCAATTAGAACATTAGCAAGTTCCCTGTTCTCAAAGTTTGATTTAGATCAATGGGAATTTATAAGAGACCATGAGATATGGAAATTAGAACAAAAGAGAGATGACATTTTACCAGCTCTGAAGTTAAGCTATGATCAAATGCCATCTCATTTAAGGCACTGTTTTGCTTTCTTTTCCCTTTTTCCCAAAGATTTTGGCTTTTTAAGTTTTATAATTTGTAATCTTTGGGAGGCGCATGGATTACTTGAATCCCTAGATGAAAGTCAAAAGCCAGAGAATATTGCAAGACAATATACAAATGAGTTTTATTCAAGATCATTTCTTCAAGATTTTGAAGACTATGGCCACTATTACTGTTTCAAAGAGTTTCTAGTGGTAGACTCCCATACTAGGAGTATACCTGAGCAAGTAAGGCATTTATCAATTGTACAAAATGATTCACTTAGCCAAGCTTTGTTCTCAAAGTCCAGAAGAGTGAGAACTATACAATTTCCCATTGAAGGAGTGAATCTTGATAGTGAAACTCTTTTGGACACATGGGTATCAAGATACAGCAGATACTTACGGTATTTAGATTTACGTGATTCTTCGTTTGAGACTCTACCTAATTCAATTGATAAATTGGAGCATCTGCGAGTTCTCATTCTTTCCAATAATTGCAAAATCAAAAGACTTGCTCATTCTATATGCAAACTCCAAAATTTGCAAGTATTGTCACTCACAGGATGCATGGAGCTTGAAACACTGCCTAAAGGATTAGGGAATCTGATCAGCCTTCGAAGACTGTTTATAACCACAAAACAATCTGTTCTGTCACAGAATGAAATTGCAAGCTTAAGCAATCTTCAAACTTTGAGTTTTCAAAATTGTGACAATTTGGAGTTTTCGTTCAATGGGACACAACTCACTTCCCTTGAAGAATATCAAGTTCGATCATGTGGGCGCCTTGGGTCCTTTCCTCTCTATATTCTCCCAAAATTGGAGGCTCTGTTTGTTGAAGACAGTCCGATGATGTCAGTGAACTATGAATGCCCAATACAAAGATTGAGGATGAAGTTTTTGTTTCTAAGGAATTTTCTAGGGAAACAGACATTGCCTCCATGGATTCAAGGAGCTGCGGACACTTTACAGACCTTGGTCATTTCTAATTTTCCTAATCTCAAGATGCTTCCTGAGTGGCTGACCACAATGACTCATCTCAAGTTTCTACTCATTCGTAACTGTCCTGAACTGTTGGATCTTCCAAGTGACATGCATCACCTCACTGCCCTTGAATATTTGGGAATAGAAGGTTGTCCTGAATTGTGTCGAAAATGTCAGCCTCAAAATGGTGAGTATTGGCCCATGATTGCTCACATCAAAGGCGTTCACATTGGAGTGCTGCACGTTAAGCCTTCCCTGGGGATGCTCACTGTAAGCCATCCGCTTCTTTTAGCCCATCTTCCTTTTTTAGTTTGA 2613 0.3957 MADSFVFGIAESLLKKLASHVYEEASRAYGVYDDLKGFKDTLLIVKGVLLDAEERKAQKHGLREWLRQLHHVCSDAEDVLDGFECQTLRKQVVKASGSTKMKVCHFFSKSNPLVFRIRMARQIKQLRDRLDKVAADGNKFGLVHARIDVDHRLVVQRREMTYSHVDASNVIGRENERENIIQLLMQPHPNGDGDGDKSLCVIPIVGIGGLGKTTLAKLVFNDKRIDELFPLKMWVCVSNDFDIRQIIVKIINSASAYAPTALAHQENISNLDIEQLQGRLRQKLFGQKFLLVLDDIWNEDRAKWIELESLIKVGAIGSKVMVTTRNNSIASMMGNVRPCILDGLSPENSLSLFVKWSFKEGQEKEHPDLVEIGKEIVKKCRGIPLAIRTLASSLFSKFDLDQWEFIRDHEIWKLEQKRDDILPALKLSYDQMPSHLRHCFAFFSLFPKDFGFLSFIICNLWEAHGLLESLDESQKPENIARQYTNEFYSRSFLQDFEDYGHYYCFKEFLVVDSHTRSIPEQVRHLSIVQNDSLSQALFSKSRRVRTIQFPIEGVNLDSETLLDTWVSRYSRYLRYLDLRDSSFETLPNSIDKLEHLRVLILSNNCKIKRLAHSICKLQNLQVLSLTGCMELETLPKGLGNLISLRRLFITTKQSVLSQNEIASLSNLQTLSFQNCDNLEFSFNGTQLTSLEEYQVRSCGRLGSFPLYILPKLEALFVEDSPMMSVNYECPIQRLRMKFLFLRNFLGKQTLPPWIQGAADTLQTLVISNFPNLKMLPEWLTTMTHLKFLLIRNCPELLDLPSDMHHLTALEYLGIEGCPELCRKCQPQNGEYWPMIAHIKGVHIGVLHVKPSLGMLTVSHPLLLAHLPFLV 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3991g00048 870 Gene3D - 428 514 IPR036388 -
Gabi3991g00048 870 Pfam Rx N-terminal domain 11 98 IPR041118 -
Gabi3991g00048 870 PRINTS Disease resistance protein signature 283 297 - -
Gabi3991g00048 870 PRINTS Disease resistance protein signature 615 631 - -
Gabi3991g00048 870 PRINTS Disease resistance protein signature 201 216 - -
Gabi3991g00048 870 PRINTS Disease resistance protein signature 380 394 - -
Gabi3991g00048 870 Pfam Leucine rich repeat 572 628 IPR001611 GO:0005515
Gabi3991g00048 870 Coils Coil 116 136 - -
Gabi3991g00048 870 Pfam NB-ARC domain 196 430 IPR002182 GO:0043531
Gabi3991g00048 870 SUPERFAMILY L domain-like 515 836 - -
Gabi3991g00048 870 PANTHER DISEASE RESISTANCE PROTEIN RP 63 814 IPR044974 GO:0006952
Gabi3991g00048 870 Gene3D - 10 124 - -
Gabi3991g00048 870 Gene3D - 153 337 IPR027417 -
Gabi3991g00048 870 Gene3D Ribonuclease Inhibitor 735 828 IPR032675 -
Gabi3991g00048 870 Gene3D Ribonuclease Inhibitor 515 734 IPR032675 -
Gabi3991g00048 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 442 IPR027417 -
Gabi3991g00048 870 Gene3D - 343 427 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3991g00048 Gabi-Chr3991 598525 601182 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3991g00048 202 820 WRKY Transcription Factor Family AT5G45050 21.865 3.88e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3991g00048 - - gmx:100795479 1197.19