Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3991g00028 ATGGACTGGCAAGGGCAAAAGCTAGCTGAGCAGCTAATGCAGATAATGCTGCTTGCATTTGCTATGACTGCATTTGCTACAGGATATGTCATGGCTTCTTTCCAGATAATGATCCTTGTATATGCTGGCGGTGTGATTCTCACTACATTGGTGACGGTCCCTAATTGGCCCTTTTTCAACCGCCATCCTCTTAATTGGTTGGATCCAAGTGAGGTAGAAAAGCATCCAAAGCCACAACCACCATCCTCTTCTTCTTCTCTAATTTTCTCCACTGAAATCTTAGCCAACACACATCAGTGTGACGGCAATCTCTCTCTTGGAATAAGCAAAAGCACTACCCTTCTCTTACAAGACAACAAGATCATACGCGCAACAATCTTTTATCTGAGTAAGGACGATGGGTCAACCAAAAAAAAAATAATAGACTACATAAAGCAAGATTACGGGGAACTACCGAATCTCCCGGAATTGGTGGCTCTTAACTTGAAGCATTTGACGGAGAGCGGAGAGGTCGAAAAGGTCAACAACAGTTACAGGTTCCTAGTAGTTCTGCTGAGCATCCCATGGAAGAAGAGGGAAGTGGGGGATTGA 591 0.4416 MDWQGQKLAEQLMQIMLLAFAMTAFATGYVMASFQIMILVYAGGVILTTLVTVPNWPFFNRHPLNWLDPSEVEKHPKPQPPSSSSSLIFSTEILANTHQCDGNLSLGISKSTTLLLQDNKIIRATIFYLSKDDGSTKKKIIDYIKQDYGELPNLPELVALNLKHLTESGEVEKVNNSYRFLVVLLSIPWKKREVGD 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3991g00028 196 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 109 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi3991g00028 196 Pfam Microsomal signal peptidase 12 kDa subunit (SPC12) 1 70 IPR009542 GO:0005787|GO:0006465|GO:0016020
Gabi3991g00028 196 PANTHER MICROSOMAL SIGNAL PEPTIDASE 12 KDA SUBUNIT 1 82 IPR009542 GO:0005787|GO:0006465|GO:0016020
Gabi3991g00028 196 SUPERFAMILY "Winged helix" DNA-binding domain 120 180 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3991g00028 Gabi-Chr3991 301505 304496 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3991g00028 119 180 Single Myb Histone (SMH) Gene Family AT5G67580 37.097 3.30e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3991g00028 K12946 - cit:102628157 143.28