Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3991g00022 ATGAAACCAAACTTTGATCTTGAAGTGGAGGCCTCAGCAGAAGATGAATCTGAAGTTAGTAGCAATGCTGCTTCCAATATATCTATTCATGAAACCACTGCAGGCCCTTGTAATGAAAGCCCCACTAACCCTTCCAATGTCACAAATCCAACAGAGCTTCATCCTCATTCAGATGCTATATCACTTGATTTAACTCTCAACTTCAATAAGAATGACTTAGTGGCAAGAGATTCAATAGGATTCTCATTCTCAAGCACTAGTGAGAGCAGCAACAATGAACCTGCTTCTCAAACTACTGCAGCAACCATCCCAAGAGTTTTCTCTTGCAATTACTGTCAGCGCAAATTTTTAAGCTCACAGGCTCTTGGTGGCCACCAAAATGCACACAAGAGAGAAAGAACATTAGCAAAGAGAGCTCTGAGAATGGGGTTTTTTTCTGAAAGGTATGCCAGTGTAGCATCTCTTCCTCTATATGGTTCATTTAGGTCCTTGGGGATAAAGGCACACTCTTCAATGCACCATGGTTTTTCACCAACAATAAGGCCTCCTGAGATAAAAAGCAATGCAAGATTTGAGCAAGGATATATTGGTCTTCCAATATTCTTGGAGGATGATGATGCAGAACTGTTGTGGCAAGGTAGTTTCCGTAAGGTTACTGAGGGAGGTAATACTCATCAGAACTTCATAACTGGAAGTTCAAATTTGAGTTTTGCTGAGGTGAATCCACCAGTTGAGACAGAGAACTCGACACCCGAATTAACATTGAAACTTTGA 774 0.4109 MKPNFDLEVEASAEDESEVSSNAASNISIHETTAGPCNESPTNPSNVTNPTELHPHSDAISLDLTLNFNKNDLVARDSIGFSFSSTSESSNNEPASQTTAATIPRVFSCNYCQRKFLSSQALGGHQNAHKRERTLAKRALRMGFFSERYASVASLPLYGSFRSLGIKAHSSMHHGFSPTIRPPEIKSNARFEQGYIGLPIFLEDDDAELLWQGSFRKVTEGGNTHQNFITGSSNLSFAEVNPPVETENSTPELTLKL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3991g00022 257 SUPERFAMILY beta-beta-alpha zinc fingers 105 134 IPR036236 -
Gabi3991g00022 257 Gene3D Classic Zinc Finger 84 150 - -
Gabi3991g00022 257 MobiDBLite consensus disorder prediction 16 54 - -
Gabi3991g00022 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Gabi3991g00022 257 FunFam Zinc finger protein 2 84 153 - -
Gabi3991g00022 257 MobiDBLite consensus disorder prediction 1 54 - -
Gabi3991g00022 257 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 188 IPR044246 GO:0009788
Gabi3991g00022 257 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3991g00022 Gabi-Chr3991 223262 226954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3991g00022 88 257 C2H2 Transcription Factor Family AT1G66140 50.000 1.98e-50 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3991g00022 - - gmx:100794851 383.645