Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3991g00017 ATGAATACCCACATCGCAAAGCTCAAAACTTTCCCCATTTTCTTATCTGGGTTCATGTTCCTTTCACTCATCCTCTATGCCAACTCACAACCCATTTCACAAGATGCCCCTGCAATGCTTGCTCTCAAGAGCACCCTCAACCCACCCGAATCTCTTGGTTGGACCGGGTCCGACCCATGCAAGTGGAACCATGTCGTTTGCTCCGAAGACAGCCGGGTCACCCGAATACAAATCGGTCGCCAAGGCCTTCAAGGTACGCTTCCTAACAACAACAACAACAACACCCTCCAAAGCCTGACCCAATTGGAGCGCTTGGAGCTCCAATTTAACAACATTTCGGGTCCTCTTCCAACCTTGAGCGGGTTGAGTTCGCTCCAAGTTATCATCCTTAGTAACAACGGGTTCACTTCCATACCCAGCGATTTCTTCGCTGGCATGTCTCAGCTTCAATCTGTTGAGATCGACAACAACCCTTTCAAAAGTTGGGAAATCCCCGATAGCCTTCGAAATGCTTCGTCTCTTGTGAACTTCTCAGCTAATTCAGCAAACATCATGGGCAAAATCCCAGATTTTTCTGAACTTGTTGGGTTGACCCATTTGCATTTGGCCTTCAATAGCCTCGAGGGTGTGTTGCCTTTGAGCTTTTCTGGGTCGCAGGTTCAGACTCTGTGGTTGAATGGGCAAAAGGGTGATGCTATTCTTGGGGGCACTGTTGAGGTTCTACAAAACATGACTTCCTTAACTCAGGTTTGGTTACATTCCAATGCGTTTACTGGGCCCTTGCCAGACTTTTCAGGCTTACAAAGCTTGCAAGATTTGAGCTTGAGAGATAACTCTTTTACTGGTCCTGTTCCTGGTTCATTGGTGAGCCTTAAGTCACTTAAAGTTGTGAACTTGACTAATAACTTGTTTCAGGGGCCAGTGCCTGTGTTTGGTTCTGGGGTAGAGGTCGATTTGACTAAGGATTCGAATAGCTTTTGCTTGTCGGGCCCTGGTGATTGTGATCCCAGGGTGAAGATTATGCTTTCTATTGTTCAGTTTATGGGGTATCCCAAAAGGTTTGCTGAGAGTTGGAAGGGGAATGATCCATGTGCTGATTGGTTTGGGATTACTTGTAATAATGGGAACATTACTGTTGTTAATTTTCAGAAGATGGGTCTTACGGGTACAATATCCCCAGCTTTTGCCTCACTTAAATCACTGCAAAGAGTGGTGCTTGCTGATAATAATCTCACTGGTTCAATTCCGGGGGAGCTTACTACTCTGCCTGAGCTTACTGAATTGAATGTTGCAAACAATCAGCTTTATGGAAAAGTCCCAAATTTTAAGAGCAATGTGATGGTTAACACAAGTGGTAACAAGGATATAGGAAAAGATAAACCCAGCCCAACTCCTATAGGTCCACTATCGCCAAACTCAACAGCTCCAAACACAAGGGAAGAAAATGGCAGCAAAAAATCTTCCCATTTAGGAGTAATTTTGATTGCCGTGATTGGGGGTGTAGTGTTGGTTTTGGTGATTGGTTTCTTAGTTTTCTGCTTGTATAGGATGAAGCGAAAGCGGTTAAGCAGGGTACAGAGCCCGAATGCACTAGTTATTCACCCCCGTCATTCTGGATCAGATAATGAAAGTGTGAAGATAACAGTTGCAGGCTCAAGTGTCAGTGTTGGTGCTGTTAGTGAAACCCAAACCGTACCTGGAAGTGAGACAGGGGACATCCAGATGGTTGAAGCAGGAAACATGGTAATTTCTATACAAGTCCTGAGGAATGTCACGGACAATTTCAGCGAGAAAAATATATTGGGACAAGGTGGGTTTGGAACAGTTTATAAAGGGGAACTGCATGATGGTACGAAAATTGCAGTGAAAAGAATGGAGTGTGGGGCAATAACTGGGAAAGGTGCAACAGAATTTAAGTCTGAAATTGCTGTTTTGACTAAGGTTCGCCACCGGCATCTTGTTTCTCTTCTTGGTTACTGCTTGGATGGGAACGAAAAACTTCTTGTGTATGAGTACATGCCTCAGGGGACACTAAGTAGACATTTATTCAACTGGTTAGAAGAAGGACTGAAACCACTTGAGTGGAATAGAAGATTAACCATTGCCTTGGATGTGGCAAGGGCTGTTGAGTATCTGCATAGCTTGGCCCATCAAAGCTTTATACATAGGGACTTAAAGCCTTCAAATATTCTCCTTGGAGATGATATGAGGGCTAAGGTTTCAGATTTTGGTCTTGTGCGTCTTGCTCCCGAAGGAAAAGCTTCAATAGAAACAAGAATTGCAGGAACTTTTGGATATTTGGCACCAGAATATGCAGTTACTGGTCGTGTGACAACTAAAGTTGATGTGTTCAGCTTTGGGGTAATATTGATGGAACTGATATCTGGAAGAAGAGCACTTGATGAGACCCAGCCAGAGGATAGCATGCATCTTGTAACATGGTTCCGTAGAATGTACATAAATAAGGACACATTCCGCGAGGCCATTGACCGCACAATCGAGCTCAACGAGGAAACGCTTGCTAGTATTCACACAGTAGCTGAGTTAGCTAGCCATTGCTGTGCTAGGGAGCCATATCAAAGACCTGACGCGGGTCATGCAGTTAATGTGCTTTCTTCTCTTGTAGAACAATGGAAACCATCTGATCACAGTTCTGAAGATATATATGTAATTGACTTAGATATGTCTTTACCACAAGCACTCAAGAAGTGGCAGGCTTATGAAGGTAGAAGCCAAATGGAATCATCTTCTTCTTCACTCCTTCCAAGCTTGGATAACACACAGACAAGCATTCCTACGCGTCCATATGGATTTGCCGAGTCTTTCACATCAGCAGATGGTAGGTGA 2847 0.4422 MNTHIAKLKTFPIFLSGFMFLSLILYANSQPISQDAPAMLALKSTLNPPESLGWTGSDPCKWNHVVCSEDSRVTRIQIGRQGLQGTLPNNNNNNTLQSLTQLERLELQFNNISGPLPTLSGLSSLQVIILSNNGFTSIPSDFFAGMSQLQSVEIDNNPFKSWEIPDSLRNASSLVNFSANSANIMGKIPDFSELVGLTHLHLAFNSLEGVLPLSFSGSQVQTLWLNGQKGDAILGGTVEVLQNMTSLTQVWLHSNAFTGPLPDFSGLQSLQDLSLRDNSFTGPVPGSLVSLKSLKVVNLTNNLFQGPVPVFGSGVEVDLTKDSNSFCLSGPGDCDPRVKIMLSIVQFMGYPKRFAESWKGNDPCADWFGITCNNGNITVVNFQKMGLTGTISPAFASLKSLQRVVLADNNLTGSIPGELTTLPELTELNVANNQLYGKVPNFKSNVMVNTSGNKDIGKDKPSPTPIGPLSPNSTAPNTREENGSKKSSHLGVILIAVIGGVVLVLVIGFLVFCLYRMKRKRLSRVQSPNALVIHPRHSGSDNESVKITVAGSSVSVGAVSETQTVPGSETGDIQMVEAGNMVISIQVLRNVTDNFSEKNILGQGGFGTVYKGELHDGTKIAVKRMECGAITGKGATEFKSEIAVLTKVRHRHLVSLLGYCLDGNEKLLVYEYMPQGTLSRHLFNWLEEGLKPLEWNRRLTIALDVARAVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELISGRRALDETQPEDSMHLVTWFRRMYINKDTFREAIDRTIELNEETLASIHTVAELASHCCAREPYQRPDAGHAVNVLSSLVEQWKPSDHSSEDIYVIDLDMSLPQALKKWQAYEGRSQMESSSSSLLPSLDNTQTSIPTRPYGFAESFTSADGR 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3991g00017 948 ProSiteProfiles Protein kinase domain profile. 595 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3991g00017 948 Gene3D Ribonuclease Inhibitor 336 460 IPR032675 -
Gabi3991g00017 948 PANTHER OSJNBA0070M12.3 PROTEIN 19 948 - -
Gabi3991g00017 948 MobiDBLite consensus disorder prediction 450 484 - -
Gabi3991g00017 948 FunFam Receptor-like kinase TMK4 33 332 - -
Gabi3991g00017 948 ProSitePatterns Serine/Threonine protein kinases active-site signature. 720 732 IPR008271 GO:0004672|GO:0006468
Gabi3991g00017 948 MobiDBLite consensus disorder prediction 915 937 - -
Gabi3991g00017 948 SUPERFAMILY L domain-like 67 443 - -
Gabi3991g00017 948 Pfam Protein kinase domain 596 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3991g00017 948 SMART LRR_typ_2 194 217 IPR003591 -
Gabi3991g00017 948 SMART LRR_typ_2 99 121 IPR003591 -
Gabi3991g00017 948 SMART LRR_typ_2 267 290 IPR003591 -
Gabi3991g00017 948 SMART LRR_typ_2 122 145 IPR003591 -
Gabi3991g00017 948 SMART LRR_typ_2 422 444 IPR003591 -
Gabi3991g00017 948 SUPERFAMILY Protein kinase-like (PK-like) 583 891 IPR011009 -
Gabi3991g00017 948 FunFam receptor protein kinase TMK1 673 890 - -
Gabi3991g00017 948 Pfam Leucine rich repeat 101 158 IPR001611 GO:0005515
Gabi3991g00017 948 CDD STKc_IRAK 601 874 - -
Gabi3991g00017 948 FunFam receptor protein kinase TMK1 557 672 - -
Gabi3991g00017 948 FunFam Leucine-rich repeat receptor-like kinase 336 459 - -
Gabi3991g00017 948 MobiDBLite consensus disorder prediction 915 948 - -
Gabi3991g00017 948 Pfam Leucine rich repeat N-terminal domain 342 373 IPR013210 -
Gabi3991g00017 948 Pfam Leucine rich repeat N-terminal domain 33 68 IPR013210 -
Gabi3991g00017 948 Gene3D Ribonuclease Inhibitor 32 334 IPR032675 -
Gabi3991g00017 948 Gene3D Transferase(Phosphotransferase) domain 1 673 895 - -
Gabi3991g00017 948 Gene3D Phosphorylase Kinase; domain 1 556 672 - -
Gabi3991g00017 948 ProSitePatterns Protein kinases ATP-binding region signature. 601 623 IPR017441 GO:0005524
Gabi3991g00017 948 SMART serkin_6 595 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3991g00017 Gabi-Chr3991 154053 157778 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3991g00017 93 862 Receptor kinase-like Gene Family AT1G55610 30.909 7.78e-89 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gabi3991g00017 Pkinase 4.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3991g00017 K00924 - gmx:100813768 1426.77