Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3991g00016 ATGGTTTTGTCTTGGACCAGAAGAAATGTTTTCCGGCGTGCACGCAAGGGGAAGGAACAATTTCCCGGTGGTGATTTGGAGGTGGAGATTGTGATCCCCACCCATTTCCGGTGCCCGGTGAGTTTGGAATTGATGAAAGACCCGGTGACTCTATCAACTGGCATCACCTACGACAGGGAGAGTATTGAGAAGTGGACTGAAGCAGGGAACAAAACTTGCCCAGTTACGAATCAGGTTCTTACAAGCTTTGACATGATCCCAAACCATGCCATTCGGAGGATGATTCAGGATTGGTGTGTTGAAAACAGTTCCCATGGTGTCGAAAGGATCCCAACACCTCGTATACCCGTGTCAAGTTACGAGGTTTCCGAGGTTTGTTCGAGGATTCTGTCTGCTTCTCAGCGTGGGGATGAAAAGAGGTGCCAAGAATTGGTGGGGAAGATCAAGGTTTGGGGGAGAGAGAGTGAGAGGAACAAGATGTGCTTATTGAGAAATGGGGTTGGTTCTGTTTTTGCCAATGCCTTTGATTCTTTTTCAAGTGCATCATCTATTGAAAAACATGTGGTTATTTTGGAGGAGATCTTGGAGGTGTTGGCATGGATGATCCCATTTGGTGAAGAGAGTCAATTATTATCCAAGTTGGGTTCAGAATCTTCTTTACATTGCATGGTTTGGTTTCTTGATGGTAAAAACCTTGCTTCAAGGCAAAGTGCTGCTTTGTTGCTGAAGGAAGTGCCTGTTAAGGAATTGGCTAAAACTGAAGGAGTTGTTGAAGCTTTGGTTAAGATGGTTAGGGAACCTATTGGACCTATTGCTACAAAGGCATGTTTGGCCACAATTTTCAACTTGGTTTCCTCAGCAGAGAATAGAGATGCAATTGCTCAAAGATTTGTGGAATTGGGTTTTGTTTCACTGCTGCTAGAGATTATTGTTGATGCAGATAAAGGGATATGTGAGAAGGCACTTGGGGTGTTGGATTGCATTTGTGACAACCAAAAAGGGAAGGAGGTTGCTAAGAACAATGCTTTAACATTGCCTCTTGCAATTAAGAAGATTTTGAGGGTGTCCCAATTGGCTTCAAGTTTTGCAGTCTCTATTATTTGGAAGATTATTTGTGACAATAGGGAGGAAGGGGTTTTGATTGAGGCACTTCAAGTTGGGGCTTTTCAGAAACTCTTGGTCGTGTTGCAGGTTGGTTGTGATGAGATCACAAGGAAGAATGCTAGCGAGTTGTTGAAATTGTTGAATGGTTACAAGAGCAAAGCAGAGTGCGTTGACTCATCATTGGATCTCAAGTACCTTAAATAG 1308 0.435 MVLSWTRRNVFRRARKGKEQFPGGDLEVEIVIPTHFRCPVSLELMKDPVTLSTGITYDRESIEKWTEAGNKTCPVTNQVLTSFDMIPNHAIRRMIQDWCVENSSHGVERIPTPRIPVSSYEVSEVCSRILSASQRGDEKRCQELVGKIKVWGRESERNKMCLLRNGVGSVFANAFDSFSSASSIEKHVVILEEILEVLAWMIPFGEESQLLSKLGSESSLHCMVWFLDGKNLASRQSAALLLKEVPVKELAKTEGVVEALVKMVREPIGPIATKACLATIFNLVSSAENRDAIAQRFVELGFVSLLLEIIVDADKGICEKALGVLDCICDNQKGKEVAKNNALTLPLAIKKILRVSQLASSFAVSIIWKIICDNREEGVLIEALQVGAFQKLLVVLQVGCDEITRKNASELLKLLNGYKSKAECVDSSLDLKYLK 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3991g00016 435 SUPERFAMILY RING/U-box 28 108 - -
Gabi3991g00016 435 SUPERFAMILY ARM repeat 190 416 IPR016024 -
Gabi3991g00016 435 PANTHER WDSAM1 PROTEIN 29 425 IPR045185 GO:0061630
Gabi3991g00016 435 Gene3D - 216 428 IPR011989 -
Gabi3991g00016 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 109 IPR013083 -
Gabi3991g00016 435 FunFam RING-type E3 ubiquitin transferase 26 108 - -
Gabi3991g00016 435 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Gabi3991g00016 435 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Gabi3991g00016 435 CDD RING-Ubox_PUB 33 85 IPR045210 -
Gabi3991g00016 435 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3991g00016 Gabi-Chr3991 146230 147596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3991g00016 21 435 U-box Gene Family AT5G37490 46.682 1.19e-124 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3991g00016 - - gmx:548086 639.417