Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3991g00015 ATGGATAGAAGGACATTTCCCAATCATGGCAAAATATTTGGTATTGAATGCCTCATTGATCTATATAAAGAAGAGCTTGTCTGCAAAAACCACAACAAAGAAAGTTTCCAATTTCCATATTGTTCTTTCTGTTTCCTTATCACCACCATCACTAGAAAGAAGGTGAAACTTGCCTTCATAGTAAATGACTCAGCAAGGAAGGCAACATTCAAGAAAAGGAAGAAGGGTCTAATGAAGAAGGTTAGTGAACTTAGCACCCTTTGTGGGATTGATGCATGTGCTATAATTTATAGCCCCTATGATCCTCAACCAGAGGTTTGGCCATCCCCATTGGGAGTTCAAAGGGTGCTTGCCAAGTTCAGAAGAATGCCTGAATTGGAGCAAAGCAAGAAGATGGTGAACCAAGAGAGTTTTATGAGGCAGAGGATCCTAAAGGCCAAAGAGCAGCTGAAGAAACAAAGGAAGGACAATAGGGAAAAGGAGATGACTCAACTCATGTTTCAGTACCTTAGTGCAGGTAAAATTCTTCACAATATAAGCATGGTTGATTTGAATGATTTGGCATGGTTGATTGACCAGAACTTGAAGGACATCAATAGAAGGATTGAAACATTGAACAAGAATGCTCAGAGCCAACCCCAAATGGCAACACCAGTGGTGACTGATGGAGTAGCCAAGATTGAAGAGAAGGCACAAGGGAGTGGTCATGGCCAGGGATTGGATATGAACATGGATGTCATGCAAAAGCAGAATTGGTTTGTGAATTTGATGAATAATGGTGGTGGTGGGGAAGAGGCACTGCCTTTTGGAGATGTTAATAACCAAAATGGCTATTGGCCAAATCCCTTTTTCCATTGA 858 0.4114 MDRRTFPNHGKIFGIECLIDLYKEELVCKNHNKESFQFPYCSFCFLITTITRKKVKLAFIVNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPYDPQPEVWPSPLGVQRVLAKFRRMPELEQSKKMVNQESFMRQRILKAKEQLKKQRKDNREKEMTQLMFQYLSAGKILHNISMVDLNDLAWLIDQNLKDINRRIETLNKNAQSQPQMATPVVTDGVAKIEEKAQGSGHGQGLDMNMDVMQKQNWFVNLMNNGGGGEEALPFGDVNNQNGYWPNPFFH 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3991g00015 285 PRINTS MADS domain signature 52 72 IPR002100 GO:0003677|GO:0046983
Gabi3991g00015 285 PRINTS MADS domain signature 72 87 IPR002100 GO:0003677|GO:0046983
Gabi3991g00015 285 SMART madsneu2 50 109 IPR002100 GO:0003677|GO:0046983
Gabi3991g00015 285 Coils Coil 140 163 - -
Gabi3991g00015 285 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 59 100 IPR002100 GO:0003677|GO:0046983
Gabi3991g00015 285 Gene3D - 62 168 IPR036879 GO:0003677|GO:0046983
Gabi3991g00015 285 ProSiteProfiles MADS-box domain profile. 50 98 IPR002100 GO:0003677|GO:0046983
Gabi3991g00015 285 PANTHER MADS BOX PROTEIN 52 202 - -
Gabi3991g00015 285 FunFam agamous-like MADS-box protein AGL80 62 146 - -
Gabi3991g00015 285 CDD MADS_SRF_like 51 134 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gabi3991g00015 285 SUPERFAMILY SRF-like 51 144 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3991g00015 Gabi-Chr3991 138732 139641 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3991g00015 50 205 Type I MADS-box Gene Family AT5G48670 67.949 7.79e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi3991g00015 SRF-TF 2.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3991g00015 - - gmx:100813231 423.705