Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi398g00001 ATGGAAGGGGTTGATTCTCAGGCTAATGATAAGCCATTGAACCCCATAGTAATGAGAAGAATTTTCCACGTAGGGAACCGATCGAAGGCAAGAAACATATGTGCTTCAACGATTGTAGCAATTGTAGCAGATGTTGTCCCAAATGATATTTTGGTGGCGCTTTTGGTTCTAGGCTGTTGCTGTTGCTGGAGAAGAAGGCGAAACAAAAACCATGATGCAGATCTAGAAATGGGAGATAGCACTAGGAATTATTTTACTTGTCAAGAAGAGTCTTTGCATTTTGACTTGGCTACAATTGAAGCTGCAACAAATAGGTTCTCGAATGAGAAGAAGATAGGCCAAGGTGGATTTGGTGTGGTTTATAAGGGTACCCTTCCTAATGGACAAGAGATAGCTGCAAAGAGGCTATACAGAAGCTCCTTGCAGGGTGACATAGAATTCAGGAACGAGGCTGCACTTGTTGCACTTCAACATAGAAATTTAGTTAGGATTTTGCTTGGAGGGAGCAGAGAGGATACTTATCATGAGAACCAAGCAGAGCTTGATTGGGCAACACGTTACCAAATTATAGTTGGGATTGCTGGAGGATTTAAATACCTGCATGAAGATTCTAGTCTTAGAATAATACATCGCGATCTCAAGGCTAGTAATGTCCTATTAGATGACGAAATGAATCCAAAGATTTCAGATTTTGGCATGGCAAAGATTTTCCATGGAGACCAAAGTCAAGTTGACTCTACAACAGAAAGGATAGTTGGAACTTAG 765 0.4092 MEGVDSQANDKPLNPIVMRRIFHVGNRSKARNICASTIVAIVADVVPNDILVALLVLGCCCCWRRRRNKNHDADLEMGDSTRNYFTCQEESLHFDLATIEAATNRFSNEKKIGQGGFGVVYKGTLPNGQEIAAKRLYRSSLQGDIEFRNEAALVALQHRNLVRILLGGSREDTYHENQAELDWATRYQIIVGIAGGFKYLHEDSSLRIIHRDLKASNVLLDDEMNPKISDFGMAKIFHGDQSQVDSTTERIVGT 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi398g00001 254 Gene3D Transferase(Phosphotransferase) domain 1 171 254 - -
Gabi398g00001 254 SUPERFAMILY Protein kinase-like (PK-like) 86 254 IPR011009 -
Gabi398g00001 254 SMART serkin_6 106 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi398g00001 254 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Gabi398g00001 254 ProSitePatterns Protein kinases ATP-binding region signature. 112 134 IPR017441 GO:0005524
Gabi398g00001 254 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 38 254 - -
Gabi398g00001 254 Gene3D Phosphorylase Kinase; domain 1 68 170 - -
Gabi398g00001 254 ProSiteProfiles Protein kinase domain profile. 106 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi398g00001 254 Pfam Protein kinase domain 107 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi398g00001 254 FunFam Os07g0541700 protein 172 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi398g00001 Gabi-Chr398 10004 12976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi398g00001 38 254 Receptor kinase-like Gene Family AT4G23230 49.153 1.30e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gabi398g00001 Pkinase 6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi398g00001 - - ccaj:109806163 271.937