Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3989g00001 ATGGCAGACCCTTACTCTAATTTCTTCTCAGGTTTCTTCAGATTCAATCACACCAACCATTACCCATCTTCAACCCCTTCTCCTCATCATCCCTATATCCACAACTTCATCAACCACACCACCACAAACAACAACATCAACAATAGCTTTTTCCACTACCATCACCATCAAAATACAACTACTAGTACAACTTCTTCTTCTTCTTCACCCCCTTCACCTCCTCTTAGAGTAGCCCTTCCACTTTTGAGCCTCACCCCAACAAAGCAAGAGAATAATGAAGAGCAAGAACAAGATCAGGATCAATCTTGCAGTGCCATGGATATTGTGGAAGAGGACTGTAGCAAGATCCGCCATTATTGTAAATTACCCAAAGAGGAAGAAAAAGATGAGGATGATGATGATAATGAAGGTGTTACTGTTTCACTTCACATAGGGTTGCCAAGCCCTAGTGCTGCTGATTTGGCTTCTGTGTTTTCTTCTTCTTCAGACAAAGAACAATTAAGAGATAATGGTAGTGAGGATTCAGGGTTCTTGGGAAACAGACTCAACAAGGGACAGTATTGGATCCCTACCCCATCTCAGATTCTCATTGGTCCTACACAGTTCTCTTGCCCTGTATGCTGCAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACACAACCAACAGGTATGCTTAGGCTTCCTTGTTACTGTTGTACCCCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCTCTCAAAGATTTTAGAACCCTTCAAACACATTACAAAAGGAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGGAAAGCTTTTGCTGTTAGAGGGGATTGGAGAACCCATGAAAAGAACTGTGGGAAGCTGTGGTATTGCATCTGTGGTTCTGATTTCAAGCACAAGAGATCCCTTAAAGATCATATAAAAGCTTTTGGGAGTGGCCATGCACCTTATGGAACCGATGGATTTGAAGAAGATGAAGAGCCAGCATCTGAAGTAGAGCATGATAATGATTTCACCCAGTAA 1092 0.4277 MADPYSNFFSGFFRFNHTNHYPSSTPSPHHPYIHNFINHTTTNNNINNSFFHYHHHQNTTTSTTSSSSSPPSPPLRVALPLLSLTPTKQENNEEQEQDQDQSCSAMDIVEEDCSKIRHYCKLPKEEEKDEDDDDNEGVTVSLHIGLPSPSAADLASVFSSSSDKEQLRDNGSEDSGFLGNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCTPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAPYGTDGFEEDEEPASEVEHDNDFTQ 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3989g00001 363 MobiDBLite consensus disorder prediction 158 177 - -
Gabi3989g00001 363 MobiDBLite consensus disorder prediction 57 78 - -
Gabi3989g00001 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 229 IPR013087 -
Gabi3989g00001 363 SUPERFAMILY beta-beta-alpha zinc fingers 271 306 IPR036236 -
Gabi3989g00001 363 ProSitePatterns Zinc finger C2H2 type domain signature. 204 224 IPR013087 -
Gabi3989g00001 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 286 306 IPR013087 -
Gabi3989g00001 363 SMART c2h2final6 202 224 IPR013087 -
Gabi3989g00001 363 SMART c2h2final6 286 306 IPR013087 -
Gabi3989g00001 363 MobiDBLite consensus disorder prediction 57 72 - -
Gabi3989g00001 363 PANTHER ZINC FINGER PROTEIN WIP2 39 357 IPR043584 GO:0003700|GO:0010468
Gabi3989g00001 363 MobiDBLite consensus disorder prediction 340 363 - -
Gabi3989g00001 363 FunFam Zinc finger protein WIP2 255 337 - -
Gabi3989g00001 363 MobiDBLite consensus disorder prediction 124 146 - -
Gabi3989g00001 363 Gene3D Classic Zinc Finger 263 340 - -
Gabi3989g00001 363 Gene3D Classic Zinc Finger 201 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3989g00001 Gabi-Chr3989 42733 45165 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3989g00001 1 360 C2H2 Transcription Factor Family AT3G57670 58.163 2.63e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3989g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3989g00001 - - gmx:100783088 507.679