Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3987g00001 ATGCTGGCCATTAAGGTTTTAGATACTTGGGTTAAACCAAGGACATGGGAAAAAAGTTTAGGCAATTCAGGACTTATTGTGCTTATTTATACAGGTGTAGCAAATGCAATTGACCTAGCTGATCGATTTCTTCCGAGGCTTACATCAGTAAATTGGCATACTCTAAAAGTTTTGCCAGCTGCACTACGTACTCAAGCAATTCAGGCTGGTTTAAATTGGTTTGAGCTGGAATGTGTATCTTCTGACAAGGTGTGTTACTGGTTGGAAATCAGTTCTGCATCAGCAATTTTATTTGTTGTGATTGCTTCTTGTTTCTTGGTTATGCTGTACAAACTAATGTCATACTGGTTCATTGAAGTTCTGGTGGTTCTATTTTGTGTTGGTGGGGTAGAGGTTGTCGTGTCTCAGAATCAGTCTCCAATGGAGGTTGAAGATGTTAAGCATTACGGGAACAGGAAAAGAAAGCTTCTTGTCAATGAAAGAGTCGAGATTAGGAGTATGGAAGATGGTCTTTTGGGCTCATGGCACCAAGGGATAGTTATCAAGTGTGGGAAGCAGAAGCGTCGTGTCAGATATGACAACTTTTTAGATGAAGCTGGATCAAATCATCTTGTGGATGTGGTAGAGGTTTCACCCGTTTTGGATGGTGGTAGTTCTTCTTCTTTTTCTTCTGCAGATGGTTGCAATGAACGTGGGCTCATTAGACCACTGCCTCCTCTGATTGAATTGGGGGTATGGGACCTTCCATTTGGTCTATGTGTTGATGCATTTTATGAGGAAGCTCGGTGGGAAGGTGTTATATTTGATCACTGCAATGGAATGGAAGAAAGGAGCATATTCTTCCCAGATTTGGGTGATGAACTGAAGATTGGAATTGATCAATTGAGGATCACTCAAGATTGGAATGAAGCTACTGAGAATTGGGAGCCACGAGGGAAGTGGATGTTTCTTGAAGTGATTGAGGAGTGTGAGCAGTTTTCCTATATTGCAGTTTCATTTAAGCAAATTTGGTATGATTTAAGGAATAGTAACGAATTTGATAAAATAAGGGACTGGACTTGTAATGTGAAAGACTTGTGGAGAGACCTTGTAAGGGAGATAGTTGGTGATTACTTTACTCTCACGCTAGAAGAAGTTTGCAAAGTCTTGGACTTTTCGGGTGCTTTCTTGAAAGAAACACCAGAGCTGGAGTCAGTTGAACATACTGATATTGTTCATTGTGATTCTAGTCCTAGTAATGTACTTGGTTCTAAAATTGGAATATCTGATTGCCCAATGGAAAGTGGTGACTCTACGAACTTGCTAGATATCGATCAAAACGGTGGTGGCATCGTTTTCATTCAAGAGAAATATGATACAAATCCTTTGGTCGATGGTGCATCTGAGAAAGAAATTGTGTTGGTAGAAGAACCTGAGTCTCAAAAGGAAATTTCCTGCTATGATGCTGGTGAAGTAATTTCAGATTCTAGCTATAATGAAAGAAGTGAAAAACGTAGACGTTCTACGTCCATATATTGGCAACCTCTGGTGCTATCTGAAGTTGAATTTTGTCCTGATGTTATTAATCAATATGGAGCTGGATGTGAGAGCAAGATGACCAGGGAAGGTTTGAAGACAAAAGCAATAAAACATCTAGCATATCTTGGATGGAGAATTGAGTGGACTCAACACAAAAATTGTCCTGGGCAAAGACGATACAGGTACATGTCACCAAATACACAGGACAAGAAGGTTTACTATTCAATTCCTCAAGTTTGTAGTCATCTGAAAAAGGAGTCCAACATGAATTTTGTGCTGTCCCAAATTGACCAGAGTAGGATGCATTCTACAGTTGACAATAATCTTTCAAATCTAGATGTTCATCATCCGATCGGGGCATCCTCTCCTGTCGAAGTTGTAGCTGAATCACATACTCCAGATGGTTTACCAATTGGGAATACAAATCATAAACGCACCACAAAATCAAAGGCCTGCCCACCAAAGCACAAGAGGAATGGATTACCTACAAGGGTGCAGAACGTAAATTCCCCTTGTCTATCACATCAAAATGTTTTGTCTTGGTTAATAGATAGCAACATGGTATTACCAAGATCTAAGGTCTACTATCGGGGAAAAGGAGGCAAGAACACTCACGACATTGAAGGGAGGGTAACTCTTGATGGAATCAAGTGTAGCTGTTGTCAGAATGTATATAGACCTGGTGGCTTTGCAATTCATGCTAATGGCTGTTATGACTGCAAGCCTTGTGCTAGTATCTTTTTGAGGGATGGTAGGTCACTCTTGGATTGCATGATACAACTAATGCATAAAAATTGGGCAAGGGAAGCTTTGGAAAAACAATGCAATGATATGTGTCAAGGTGAAAATGACAATTTTTCTGTTTGTCATTATGGTGGTGAACTTATTTTATGTGACAAATGCCCATCTGCATTTCATGTGGAGTGTCTTGGTTTGGAGGATATCCCTGATGGTGACTGGTTTTGTCCATCATGCCGTTGCCGGATTTGCAACGAAATCAAAATCCAAGGGACTGAAGATGGAGATTTTCTTACTTGCATTCAATGTGAACATAAGTATCACATTGGATGCCTGAGAAAAAGAGCAGGAGATAAATCAAGAATATATTTGAAAAAAAATTGGTTATGTGGAGAAGAGTGTGAACAG 2664 0.3994 MLAIKVLDTWVKPRTWEKSLGNSGLIVLIYTGVANAIDLADRFLPRLTSVNWHTLKVLPAALRTQAIQAGLNWFELECVSSDKVCYWLEISSASAILFVVIASCFLVMLYKLMSYWFIEVLVVLFCVGGVEVVVSQNQSPMEVEDVKHYGNRKRKLLVNERVEIRSMEDGLLGSWHQGIVIKCGKQKRRVRYDNFLDEAGSNHLVDVVEVSPVLDGGSSSSFSSADGCNERGLIRPLPPLIELGVWDLPFGLCVDAFYEEARWEGVIFDHCNGMEERSIFFPDLGDELKIGIDQLRITQDWNEATENWEPRGKWMFLEVIEECEQFSYIAVSFKQIWYDLRNSNEFDKIRDWTCNVKDLWRDLVREIVGDYFTLTLEEVCKVLDFSGAFLKETPELESVEHTDIVHCDSSPSNVLGSKIGISDCPMESGDSTNLLDIDQNGGGIVFIQEKYDTNPLVDGASEKEIVLVEEPESQKEISCYDAGEVISDSSYNERSEKRRRSTSIYWQPLVLSEVEFCPDVINQYGAGCESKMTREGLKTKAIKHLAYLGWRIEWTQHKNCPGQRRYRYMSPNTQDKKVYYSIPQVCSHLKKESNMNFVLSQIDQSRMHSTVDNNLSNLDVHHPIGASSPVEVVAESHTPDGLPIGNTNHKRTTKSKACPPKHKRNGLPTRVQNVNSPCLSHQNVLSWLIDSNMVLPRSKVYYRGKGGKNTHDIEGRVTLDGIKCSCCQNVYRPGGFAIHANGCYDCKPCASIFLRDGRSLLDCMIQLMHKNWAREALEKQCNDMCQGENDNFSVCHYGGELILCDKCPSAFHVECLGLEDIPDGDWFCPSCRCRICNEIKIQGTEDGDFLTCIQCEHKYHIGCLRKRAGDKSRIYLKKNWLCGEECEQ 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3987g00001 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 833 888 IPR013083 -
Gabi3987g00001 888 Pfam Tify domain binding domain 715 767 IPR032308 -
Gabi3987g00001 888 ProSiteProfiles Zinc finger PHD-type profile. 778 834 IPR019787 -
Gabi3987g00001 888 Pfam PHD-finger 795 833 IPR019787 -
Gabi3987g00001 888 Pfam Signal peptide peptidase 89 142 IPR007369 GO:0004190|GO:0016020
Gabi3987g00001 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 782 832 IPR013083 -
Gabi3987g00001 888 Pfam Agenet domain 160 239 IPR008395 -
Gabi3987g00001 888 SUPERFAMILY FYVE/PHD zinc finger 769 832 IPR011011 -
Gabi3987g00001 888 SMART PHD_3 780 832 IPR001965 -
Gabi3987g00001 888 SMART PHD_3 833 886 IPR001965 -
Gabi3987g00001 888 PANTHER PHD FINGER PROTEIN 12 525 888 IPR042163 GO:0003714|GO:0045892
Gabi3987g00001 888 MobiDBLite consensus disorder prediction 639 666 - -
Gabi3987g00001 888 CDD Tudor_Agenet_AtDUF_rpt1_3 158 239 - -
Gabi3987g00001 888 SMART agenet_At_2 246 303 IPR014002 -
Gabi3987g00001 888 SMART agenet_At_2 154 216 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3987g00001 Gabi-Chr3987 59473 71082 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3987g00001 670 888 PHD Transcription Factor Family AT5G58610 47.598 3.20e-53 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3987g00001 Agenet 1e-13 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3987g00001 - - vra:106763506 852.818