Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3986g00083 ATGAAGGTGATCGCCGCCTATTTACTTGCCGTGTTGGGAGGGAACACGACCCCTTCCGCCGATGACCTAAAGGACATCCTTGGCTCTGGTATACCTTTTCTAATTCTGAATTTTCAATTTTCAGTTGGAGCAGAAGCGGATGATGATAACATCGGCGTTCTCTTGTCTGAATTGAAGGGTAAAGACATAGCAGAGGTTATTGCCTCCGGCAGGGAAAAGTTAGCCTCAGTTCCTTCTGGTGGTGGTGGTGCCGCCGTTGCCGTCGCTGCTGCTTCTGGTGGTGGCGGTGGCGCTGCTGCTCCAGCAGCCGCCGAATCAAAGAAAGAGGAAAAGGTGGAGGAAAAAGAGGAATCAGACGATGACATGGGTTTCAGTCTCTTTGATTAA 387 0.5039 MKVIAAYLLAVLGGNTTPSADDLKDILGSGIPFLILNFQFSVGAEADDDNIGVLLSELKGKDIAEVIASGREKLASVPSGGGGAAVAVAAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3986g00083 128 Pfam 60s Acidic ribosomal protein 41 127 - -
Gabi3986g00083 128 CDD Ribosomal_P2 1 77 IPR044076 GO:0002182|GO:0003735|GO:0022625
Gabi3986g00083 128 Gene3D - 1 31 IPR038716 -
Gabi3986g00083 128 Gene3D - 36 71 IPR038716 -
Gabi3986g00083 128 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 128 IPR044076 GO:0002182|GO:0003735|GO:0022625
Gabi3986g00083 128 MobiDBLite consensus disorder prediction 91 128 - -
Gabi3986g00083 128 Hamap 50S ribosomal protein L12 [rpl12]. 2 128 IPR027534 GO:0003735|GO:0005840|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3986g00083 Gabi-Chr3986 626352 627365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3986g00083 1 128 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 58.594 1.98e-28 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3986g00083 K02943 - jre:108984253 121.324