Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3986g00082 ATGAAGGTGATCGCCGCCTATTTACTTGCCGTGTTGGGAGGGAACACGACCCCTTCCGCCGATGACCTAAAGGACATCCTTGGCTCTGTTGGAGCAGAAGCGGATGATGATAACATCGGCGTTCTCTTGTCTGAATTGAAGGGTAAAGACATAGCAGAGGTTATTGCCTCCGGCAGGGAAAAGTTAGCCTCAGTTCCTTCTGGTGGTGGTGGTGCCGCCGTTGCCGTCGCTGCTGCTTCTGGTGGTGGCGGTGGCGCTGCTGCTCCAGCAGCCGCCGAATCAAAGAAAGAGGAAAAGGTGGAGGAAAAAGAGGAATCAGACGATGACATGGGTTTCAGTCTCTTTGATTAA 351 0.5299 MKVIAAYLLAVLGGNTTPSADDLKDILGSVGAEADDDNIGVLLSELKGKDIAEVIASGREKLASVPSGGGGAAVAVAAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3986g00082 116 MobiDBLite consensus disorder prediction 79 116 - -
Gabi3986g00082 116 Gene3D - 1 59 IPR038716 -
Gabi3986g00082 116 Hamap 50S ribosomal protein L12 [rpl12]. 2 116 IPR027534 GO:0003735|GO:0005840|GO:0006414
Gabi3986g00082 116 CDD Ribosomal_P2 1 116 IPR044076 GO:0002182|GO:0003735|GO:0022625
Gabi3986g00082 116 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 116 IPR044076 GO:0002182|GO:0003735|GO:0022625
Gabi3986g00082 116 Pfam 60s Acidic ribosomal protein 18 115 - -
Gabi3986g00082 116 FunFam 60S acidic ribosomal protein P2 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3986g00082 Gabi-Chr3986 626352 627365 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3986g00082 1 116 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 64.655 1.70e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3986g00082 K02943 - jre:108984253 130.183