Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3986g00081 ATGAAGGTGATCGCCGCCTATTTACTTGCCGTGTTGGGAGGGAACACGACCCCTTCCGCCGATGACCTAAAGGACATCCTTGGCTCTGTTGGAGCAGAAGCGGATGATGATAACATCGGCGTTCTCTTGTCTGAATTGAAGGGTAAAGACATAGCAGAGGTTATTGCCTCCGGCAGGGAAAAGTTAGCCTCAGTTCCTTCTGGTGGTGGTGCAGCCGCCGAATCAAAGAAAGAGGAAAAGGTGGAGGAAAAAGAGGAATCAGACGATGACATGGGTTTCAGTCTCTTTGATTAA 294 0.4932 MKVIAAYLLAVLGGNTTPSADDLKDILGSVGAEADDDNIGVLLSELKGKDIAEVIASGREKLASVPSGGGAAAESKKEEKVEEKEESDDDMGFSLFD 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3986g00081 97 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 97 IPR044076 GO:0002182|GO:0003735|GO:0022625
Gabi3986g00081 97 CDD Ribosomal_P2 1 97 IPR044076 GO:0002182|GO:0003735|GO:0022625
Gabi3986g00081 97 Gene3D - 1 59 IPR038716 -
Gabi3986g00081 97 Pfam 60s Acidic ribosomal protein 18 96 - -
Gabi3986g00081 97 Hamap 50S ribosomal protein L12 [rpl12]. 2 97 IPR027534 GO:0003735|GO:0005840|GO:0006414
Gabi3986g00081 97 MobiDBLite consensus disorder prediction 62 97 - -
Gabi3986g00081 97 FunFam 60S acidic ribosomal protein P2 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3986g00081 Gabi-Chr3986 626352 627365 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3986g00081 1 97 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 63.964 3.45e-33 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3986g00081 K02943 - egr:104421287 135.191