LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3986g00045	ATGGCATTTCCTTTGGGAATTCTTTTGTTCTTTCTTATTGCATTGCCAATTTCTGATGTGCATGCAGACATTATCTCCCCATGGAGATATGAAGCTTATAACAATTTTGAAGGAGGTCACAGAGTGGGCGTTACCCGCAAGCATCATCGCCCCAAGTTTAGCCCTAGCCAATGGAAGGAGGCTCATGCTACCTTCTATGAAGGAAACTCCGGAACATTTGGAGCTTGTGGGTATCAAGATGTGGTTAAAGAAGGTTATGGGATTGACACGACAGCATTGAGCACAGCTTTGTTCAACAATGGCCGGACATGTGGGGCATGTTTCCAGATCAAATGTGTAAACTCTCAATGGTGTAAAGGCCAATCCTCTATTTATGTCACAGCCACCGACCTTTGCCCTCCAAATTATAGTATACCAAGTGACAATGGAGGATGGTGCAACCCACCACGCAAGCACTTTGACTTAGCCATCCCTGCATATCTCAAATTTGCAGAATACAGGGGTGGCATTGTGCCAGTCATATATCGCAGGGTACCTTGTAAGAGGGAGGGAGGTATTAGGTTCACCATGAATGGGAATCCTTATTTCAATCTAATAAAAGTGTGGAATGTTGGAGGAGCTGGGGAAATAGTAAGAGTGCAAGTGATGAAGGATGATGGCAAGTTCAAATGGACAGATTTGAGGCGAAATTGGGGTCAGAATTGGGATACAGAGACCTGGGAAGTTTTTGCCTTCATAGGTCTGAGCAAACTGCCAATACTTAGGGGCGACACGCCTTGA	780	0.45	MAFPLGILLFFLIALPISDVHADIISPWRYEAYNNFEGGHRVGVTRKHHRPKFSPSQWKEAHATFYEGNSGTFGACGYQDVVKEGYGIDTTALSTALFNNGRTCGACFQIKCVNSQWCKGQSSIYVTATDLCPPNYSIPSDNGGWCNPPRKHFDLAIPAYLKFAEYRGGIVPVIYRRVPCKREGGIRFTMNGNPYFNLIKVWNVGGAGEIVRVQVMKDDGKFKWTDLRRNWGQNWDTETWEVFAFIGLSKLPILRGDTP	259

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3986g00045	259	PRINTS	Expansin signature	184	196	IPR002963	GO:0009664
	Gabi3986g00045	259	PRINTS	Expansin signature	85	99	IPR002963	GO:0009664
	Gabi3986g00045	259	PRINTS	Expansin signature	160	173	IPR002963	GO:0009664
	Gabi3986g00045	259	PRINTS	Expansin signature	196	217	IPR002963	GO:0009664
	Gabi3986g00045	259	PRINTS	Expansin signature	124	134	IPR002963	GO:0009664
	Gabi3986g00045	259	PRINTS	Expansin signature	143	160	IPR002963	GO:0009664
	Gabi3986g00045	259	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	195	259	IPR007117	-
	Gabi3986g00045	259	SMART	dpbb_1	90	175	IPR007112	-
	Gabi3986g00045	259	Pfam	Expansin C-terminal domain	186	239	IPR007117	-
	Gabi3986g00045	259	Gene3D	-	185	244	IPR036749	-
	Gabi3986g00045	259	CDD	DPBB_EXPA_N	57	180	-	-
	Gabi3986g00045	259	PRINTS	Expansin/Lol pI family signature	168	184	IPR007118	GO:0005576
	Gabi3986g00045	259	PRINTS	Expansin/Lol pI family signature	57	72	IPR007118	GO:0005576
	Gabi3986g00045	259	PRINTS	Expansin/Lol pI family signature	224	238	IPR007118	GO:0005576
	Gabi3986g00045	259	ProSiteProfiles	Expansin, family-45 endoglucanase-like domain profile.	73	185	IPR007112	-
	Gabi3986g00045	259	Gene3D	-	42	181	IPR036908	-
	Gabi3986g00045	259	Pfam	Lytic transglycolase	90	175	IPR009009	-
	Gabi3986g00045	259	PANTHER	EXPANSIN-A15	50	239	IPR002963	GO:0009664
	Gabi3986g00045	259	SUPERFAMILY	Barwin-like endoglucanases	56	203	IPR036908	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3986g00045	Gabi-Chr3986	470165	471766	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3986g00045	53	238	Expansin Gene Family	AT2G39700	60.733	5.61e-81	242

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3986g00045	-		-	gmx:100800424	331.257