Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3986g00041 ATGGACTTTCATCTGAAGCAATGGAGAAACCAGCATGAGTCAGCGGAACAACATTCTACAAAGATGCCAAAACTTCTACCTGCAGAATCCCATCAACAGCCAGAGTCATCTGCATCTGCATCTGCTCTTCCTTTGTTTTTACCTGAACCTAACAGCAAAGTCAGCACCCTGTCAGATTCAACATTTGCTACTAACGGATTTCCCAGGATGGGAAGTTATTTCAGCTTGGCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTTAGGTACATGTTGGCTGGTACTGCTGTTCCTCATGAGCTTCTTCAACCAATCAAGAAAAGCCTTCTTCATTCCCCTTCATATTTCCTTCATCACCCTCTCCAACATTATCAGCCTGCTTTGTTGCAATCAGGGTATTGGGGAAGAGGAGCCATGGATCCGGAGCCAGGCCGTTGTCGGAGGACCGACGGGAAAAAGTGGCGGTGCTCGAGGGACGTGGTGGTTGGGCAGAAGTACTGCGAGCGGCACATGCATCGCGGTCGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACTAGTGCCGCTGGTGGTGGATCTCTCGCTGCTTCATCTTCCATTATTTCTTCACAGCCTCTGGCTACTGTCTCGCTGAAATCCCCTTTCGATCTTCTTCACCTTAATGAACGTTCCTCTGGGACCAAGAATGAAGACAAGGTCTTGGTTGAAAACCAAAACCAAAACCAAGACCATGTGGGTGGGGATGGCAAATCAGGGGGTCAAATGCTGAGGCATTTCTTTGATGATTGGCCACGATCACTGCAACAGACTGACAACGCTGAAAACAATGCTGGCGGGATGAACTCGGCGACATGTCTATCTATTTCAATGCCCGGAAATACTTCGTCGGATGTATCATTGAAATTGTCCACTGGCTACGGAGAGGATCCGTGCCCAAGAAATGGGAATGTGGACCCAGACACAGAACAACTGCAATTGAATTGGGCCGGAGGATGGACTTCGGCTAATCAAGTGGCCTCAATGGGAGGACCACTTGCAGAGGCACTGAGATCATCTACGTCAACTTCATCACCCACTAGTGTTTTGCATCAGTTGCCTCCTAGTTCTGGATCTGAGACTAGCTTCATTAGTACCTAG 1146 0.4869 MDFHLKQWRNQHESAEQHSTKMPKLLPAESHQQPESSASASALPLFLPEPNSKVSTLSDSTFATNGFPRMGSYFSLAQWQELELQALIFRYMLAGTAVPHELLQPIKKSLLHSPSYFLHHPLQHYQPALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVVGQKYCERHMHRGRNRSRKPVELPTPTSAAGGGSLAASSSIISSQPLATVSLKSPFDLLHLNERSSGTKNEDKVLVENQNQNQDHVGGDGKSGGQMLRHFFDDWPRSLQQTDNAENNAGGMNSATCLSISMPGNTSSDVSLKLSTGYGEDPCPRNGNVDPDTEQLQLNWAGGWTSANQVASMGGPLAEALRSSTSTSSPTSVLHQLPPSSGSETSFIST 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3986g00041 381 ProSiteProfiles WRC domain profile. 141 185 IPR014977 -
Gabi3986g00041 381 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3986g00041 381 Pfam QLQ 74 106 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi3986g00041 381 ProSiteProfiles QLQ domain profile. 73 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi3986g00041 381 Pfam WRC 142 184 IPR014977 -
Gabi3986g00041 381 MobiDBLite consensus disorder prediction 351 381 - -
Gabi3986g00041 381 SMART QLQ_2 72 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi3986g00041 381 MobiDBLite consensus disorder prediction 172 198 - -
Gabi3986g00041 381 MobiDBLite consensus disorder prediction 1 19 - -
Gabi3986g00041 381 PANTHER GROWTH-REGULATING FACTOR 5 39 300 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3986g00041 Gabi-Chr3986 423760 425998 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3986g00041 1 368 GRF Transcription Factor Family AT3G52910 51.414 6.14e-94 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gabi3986g00041 WRC 4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3986g00041 - - gmx:100814842 542.347