Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3986g00036 ATGCGTTCCAGTAACGGTGACAGTTGTGCATCAAGCAACGCCAGTGGCAGCAGCAGCAACAGCAACAGCAAAGCCTCTTCTGAAACAACTGGCCGTCACCCGGTGTACCGGGGAGTGAGGCGTCGGAGTAGTGGGAAATGGGTTTCTGAAATTCGGGAGCCAAAGAAGCCAGATAGGATTTGGTTAGGAACATTTCCTACACCAGAAATGGCAGCTATTGCTTATGATGTTGCTGCGCTTGCTCTTAAGGGTAAGGATGCTGAACTCAACTTCCCTAACTCGGCTTCTTCGTTGCCTGTTCCTGCTTCTTCCTCTGCCCGTGATATTAAGATGGCTGCTGCTAGTGCTGCATCTGCTCTTGGAGCTGCCAAGGATGCATTAATGGCTATTGAAGGAAACCGAGGAGGGAATGTTTCAGTGGCACAAGATATGGCAACGGGGAATGAGTTTGTTGATGAGGACTTGATCTTTGATATGCCAAATGTTCTGGTTAATATGGCTGAAGGAATGCTTCTTAGCCCTCCTCGATTTGACATTGCTAGCGAGTATGCTACCCCAGAAAACTTGGGTGAAGACCCAAACCTGTGGAGTTTCCCTTATTTCCCATAA 609 0.4844 MRSSNGDSCASSNASGSSSNSNSKASSETTGRHPVYRGVRRRSSGKWVSEIREPKKPDRIWLGTFPTPEMAAIAYDVAALALKGKDAELNFPNSASSLPVPASSSARDIKMAAASAASALGAAKDALMAIEGNRGGNVSVAQDMATGNEFVDEDLIFDMPNVLVNMAEGMLLSPPRFDIASEYATPENLGEDPNLWSFPYFP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3986g00036 202 CDD AP2 36 94 IPR001471 GO:0003700|GO:0006355
Gabi3986g00036 202 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Gabi3986g00036 202 SUPERFAMILY DNA-binding domain 35 94 IPR016177 GO:0003677
Gabi3986g00036 202 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Gabi3986g00036 202 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Gabi3986g00036 202 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 197 IPR045277 GO:0003700
Gabi3986g00036 202 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Gabi3986g00036 202 MobiDBLite consensus disorder prediction 1 50 - -
Gabi3986g00036 202 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Gabi3986g00036 202 PRINTS Ethylene responsive element binding protein signature 74 94 IPR001471 GO:0003700|GO:0006355
Gabi3986g00036 202 MobiDBLite consensus disorder prediction 1 30 - -
Gabi3986g00036 202 Pfam AP2 domain 34 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3986g00036 Gabi-Chr3986 347362 347970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3986g00036 25 199 AP2-EREBP Transcription Factor Family AT2G36450 62.295 8.84e-58 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3986g00036 AP2 9.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3986g00036 - - gmx:100799620 253.062