Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3986g00031 ATGGACATGGAGAGCACGCGTAGATCGTTGGATAGATCGAGAGAACCGGGCGCCAAGAAGCTCCGATTGATCGACGAGCTCGACCGCGGTTCGAACCCCACTGCCCGACCTTTTCCTCAGCGACAACAACCGGGGTCTGGGGTGGTTACTACTACGGTGGCGTCTGCGAGGTTTCGAACAAACGACAGAAACTCCGAAAGCAGCGATTTGGGTCGCGGTGGTGAGTACCAGCCGCAGCCACCGCCGCACCAGGAGCTTGTGATTCAGTATAGGACCGCGCTTGCTGAGCTCACTTTCAACTCGAAGCCGATAATTACCAACTTGACTATAATTGCTGGAGAGAACCAATCTGCTGCCAAAGCAATTGCTGGGACTGTTTGTGCTAACATTCTAGAGGTTCCAAGTGAACAAAAGCTGCCCTCACTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTTGCTTCCAGACTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGATCCTAATGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAAAGGAGTATTTCCTCCTCAGACCCTTCAGATGATTGAGAGGGAGCTTGGCTTCACTCCTGCAGTCAATGGTTCAGCTTCTGCTTCTGCTACACTTAGGAGTGATTCGCAGTCACAACGCCCACCTCATAGCATCCATGTGAATCCCAAGTATCTAGAAAGGCAGCGTCTTCAGCAGACCAGCAGGACTAAAGGAGTAGCTAATGACATGACTGGAGCTATTTTAAACTCAAATGAGGACTCAGAGAGGCCAGAAAGAGCTTTGAGTGCTGCACGACCATGGTTGGATCCTAGGGTTAACATGCAGAATAATCAGCGCACTCAGAGAAATGCATTTAATGATTCTATTCCAGAAAAGAGCATTGGTGGAACCTATGGAGGTGATGTTGCGGAGACCACATCTGGGCAAAGAAATGGTTTCAGTCTCAAGCATGGTTTTTCGAATCATGAAGCACCAAAGTCCATGAATTTGGATGCACCTCGTCAGCCAACACAAAACTTAACTAACATAAGGAGCAATGTGATGTCAAATAACTGGAAAAATTCTGAGGAAGAAGAGTTCACGTGGCGTGAGATGAACTCTGGTTTGACTGATCATGGTGCATCCAGTGTCTCTAACAACTTGAGCGCAGACCCATGGATGGCTGATGATGAGAATTTGGAAGGTGAAGATCACCTCCAGATCACAGACCCTTTTGGGGCGAAGGCTGATAGAGAAATATCCACTGTTAAGAAACAACTACCTGCATTTGGGGGCCATTCATCATTAACATGGCAATTGCAGAAGCAGCACTCATTTGATAAGTTGAATCTGAAGCCAGGTCACCCTGAAGGATTTGTGTCCACTCCTGATGGCTTGCCAGGCAATACTAATTCTTCAACTGTCAGGATGGGGAATCGGTCTTTTATGCCAAATGCAACAATAGGAATGGTCAAATTTATGGGACAACAATTTGACTCAGAGGGAGCCGAATCGCCTTCTGGGCAGTCGCCTTTGCGACAACAGTCTCCATCACTGCCAGTAACAATGCATCAGCAGCCTCATTCAATGGGAAAATTTTCTGAGCATGACCGTCCCCAAATTCTTAAAACATCTCAATCTTTGGGAGGTATGCAAAGCCAATATATTAGAGATCTCTCACCCACTCTTCCTCCCAATGTTCAGGTTGGTAACTTGCGAAGATCACAGGAAAAGGACTTGCCAGGTCCATTATCTTCTGTAACTTCTTTTCAGTCAGGGCTTCAGCAACAGCGGCTGGGCCCTTCTAAAACTGGAGTTACTATTAAAACTAAGAAGCCACCCCAGTCTAAAGTTTCTTCAGCCAGAGAAACTTCAGAACAGTCAACAAGTAGTTTGTCAGCTGCAGATGTGAAGAGTGGAATCTTCCCCAAGAAATCAATTACCAGTAGTCTTCCTACTACAAGTAGTCTGGATGCTAGGAATCTTCCATCTCAATCAAGGATTCGGCCTACTAAGTCAGGTGGACCTTCCCCTACGACATTAATTTCTTCAGGGTCTGCTGTTGCATCACCATCTTCATTAGGTCCTTTAAATGATGATTCATCTACTCTGCCAAAAATACCTCAAGGAAAGGCTGGACAACCACAAAGGACTTCTACTCCTGCTAATGTGAGCAGTGCCTCGGCTCCAAGCTCAAATGCCACCAATAATAATACCTTAAATCCAATTGCAAATCTTTTAAGCTCGTTAGTTGCAAAGGGTTTGATATCTGCAGAAACAGAGTCGGTGACTGTGGTACCAAGTGAGATGCTGATGCAATCGGAAGACGAGACTGAAAGCATTACCCCCAGCTGCTCTTTGCCAGTTGCGTCAGTTTCTGGTTCTGCAGCTGTCCCGGTACCATCTTCAGGAGACAAGGTAGATGATGTTGGAAAATCCTCTCTTGCCTTACTTCAATCAACTAGCACAGAAGTCAGAAATCTCATTGGCTTTGATTTCAAACCTGATATAATCCGAGAATTGCATCCACCTGTAATCAGGGGATTATTGGATGATCTCCCACATCATTGCACAATTTGCGGTATTAGGCTTAAAAAGCAAGAACAGTTCGATAGACACTTGGAGTGGCATGCCACAAGAGAAAGAGAACAAAATGGTCTAATTAGGGCATCAAGAAGATGGTATGCTAAGTCAAAAGACTGGATTGCTGGCAGGGCCGGAGATCTGTCTGAGTTTGAGTTTACAGACTCTGTAGATGTATACGACGAGAAAACAGGCGGGAGTCAATTGGATACCATGGTTCCAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGTGAGCTATTTGAAGATGTATACTGTCAAGAAAGGGACGAGTGGATGTTCAAAGGTGCTGTTTACCTGAACAACTCAGATAGAAACAGTGAGATTGAAAGTAGAAATGTGGGTCCCATCATTCATGCTAGATGCTTAACAGAGAACTCAATATCCAGTGTCACGAATACAGAACATGATTGA 3051 0.452 MDMESTRRSLDRSREPGAKKLRLIDELDRGSNPTARPFPQRQQPGSGVVTTTVASARFRTNDRNSESSDLGRGGEYQPQPPPHQELVIQYRTALAELTFNSKPIITNLTIIAGENQSAAKAIAGTVCANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFASRLPEVFCKAYRQVDPNVHSSMRHLFGTWKGVFPPQTLQMIERELGFTPAVNGSASASATLRSDSQSQRPPHSIHVNPKYLERQRLQQTSRTKGVANDMTGAILNSNEDSERPERALSAARPWLDPRVNMQNNQRTQRNAFNDSIPEKSIGGTYGGDVAETTSGQRNGFSLKHGFSNHEAPKSMNLDAPRQPTQNLTNIRSNVMSNNWKNSEEEEFTWREMNSGLTDHGASSVSNNLSADPWMADDENLEGEDHLQITDPFGAKADREISTVKKQLPAFGGHSSLTWQLQKQHSFDKLNLKPGHPEGFVSTPDGLPGNTNSSTVRMGNRSFMPNATIGMVKFMGQQFDSEGAESPSGQSPLRQQSPSLPVTMHQQPHSMGKFSEHDRPQILKTSQSLGGMQSQYIRDLSPTLPPNVQVGNLRRSQEKDLPGPLSSVTSFQSGLQQQRLGPSKTGVTIKTKKPPQSKVSSARETSEQSTSSLSAADVKSGIFPKKSITSSLPTTSSLDARNLPSQSRIRPTKSGGPSPTTLISSGSAVASPSSLGPLNDDSSTLPKIPQGKAGQPQRTSTPANVSSASAPSSNATNNNTLNPIANLLSSLVAKGLISAETESVTVVPSEMLMQSEDETESITPSCSLPVASVSGSAAVPVPSSGDKVDDVGKSSLALLQSTSTEVRNLIGFDFKPDIIRELHPPVIRGLLDDLPHHCTICGIRLKKQEQFDRHLEWHATREREQNGLIRASRRWYAKSKDWIAGRAGDLSEFEFTDSVDVYDEKTGGSQLDTMVPADENQCLCVLCGELFEDVYCQERDEWMFKGAVYLNNSDRNSEIESRNVGPIIHARCLTENSISSVTNTEHD 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3986g00031 1016 MobiDBLite consensus disorder prediction 591 646 - -
Gabi3986g00031 1016 Pfam CID domain 92 201 IPR006569 -
Gabi3986g00031 1016 ProSiteProfiles CID domain profile. 82 210 IPR006569 -
Gabi3986g00031 1016 MobiDBLite consensus disorder prediction 509 548 - -
Gabi3986g00031 1016 FunFam polyadenylation and cleavage factor homolog 4 79 207 - -
Gabi3986g00031 1016 SMART 558neu5 85 207 IPR006569 -
Gabi3986g00031 1016 MobiDBLite consensus disorder prediction 1 29 - -
Gabi3986g00031 1016 ProSitePatterns Zinc finger C2H2 type domain signature. 867 887 IPR013087 -
Gabi3986g00031 1016 MobiDBLite consensus disorder prediction 653 747 - -
Gabi3986g00031 1016 MobiDBLite consensus disorder prediction 243 268 - -
Gabi3986g00031 1016 MobiDBLite consensus disorder prediction 35 61 - -
Gabi3986g00031 1016 MobiDBLite consensus disorder prediction 584 747 - -
Gabi3986g00031 1016 MobiDBLite consensus disorder prediction 217 234 - -
Gabi3986g00031 1016 Gene3D - 79 207 IPR008942 -
Gabi3986g00031 1016 MobiDBLite consensus disorder prediction 1 82 - -
Gabi3986g00031 1016 CDD CID_Pcf11 87 206 IPR047415 -
Gabi3986g00031 1016 SUPERFAMILY ENTH/VHS domain 82 211 IPR008942 -
Gabi3986g00031 1016 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 53 1010 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Gabi3986g00031 1016 MobiDBLite consensus disorder prediction 217 274 - -
Gabi3986g00031 1016 MobiDBLite consensus disorder prediction 510 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3986g00031 Gabi-Chr3986 262274 269167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3986g00031 73 386 C2H2 Transcription Factor Family AT4G04885 40.950 4.53e-60 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3986g00031 K14400 - gmx:100788958 1331.24