Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3986g00030 ATGAACCCAAAACAAGTAAATGACTTGAAGGGTAATGCTAAAGCCCCAGAGGGAACAACTGGTTTCTCTCCCATTCAGTTGGGTTCTGATGAAGCATTTTCGTCAAGCTCTACTCTTCTAATGGGGGATGTTGGACTTTCTGGGTCTCTTCCTTTGTCTCCTCATGAAGCATTATCAACCATGAACCTGACATCAAGCTCTAAGTTTGAGAGTGTGCCACAGCCTCTTGAATGTTTGCAAGTGAACCCAGTTCCGCCATTTCTGTCCAAAACTTTTGATCTAGTGGATGATCCATCGCTGGATCCGATTATATCCTGGGGCTCCACCGGTGAGAGTTTCACAGTGTGGGATCCTACCCAATTTGCAAGACACATCTTGCCAAGGAATTTCAAGCATAACAATTTCTCCAGTTTTGTTCGCCAGCTAAATACTTATGGATTCCGCAAGATTGACACTGATAAGTGGGAGTTTTTTAATGAAGCTTTCCAGCGAGGAAAGAGACATCTTCTGAAGAACATCCAAAGGCGCAAGTCACCTCAATCCCAGGATGTTATTAGCTATATTGATATTGGGCCTTCCACTAATGCAGAGAAGTCTGGTCTTGAGGTTGAGATAGAAAGACTAAGGAAGGAGAGGAGTGTGTTAATGCAAGAGGTGGTTGAATTGCAGCAACAGCAGCAAACAACAGTTGATCGTGCAAGACAAGTGAATCAGAGGCTCCAATTTGCAGAGCAGATACAGAAACAAATGGTTTCTTTCTTGGCAAAGTTATTTGAAAACCCAGACTCTCTAACCCACATTAAGCATGAGAAGGAACAGAGAGATATAGGTTCTCCTAGAGGTAGAAGGAAGCTTATCAAGCAGAACCAACGCCAAACAGGAATCTCAGATTCTTTGAAGAAAGTGCAGATTGTGAGACACCAACCTAATTGGAGAAACATAACCATCTCTTCTGAAATACCATATCCAAATCCAGTTTCCATTGAACAATCTCCTCATTACCTTTCACAAGGTTTGGCAAGAGAAATGAGTGAAGGTGCAAAGAATCTGACTCTGCAGTTTGAAAATGTTGTATCAGATGAATTGGCTGTAAGTGTAACACATGAGGTTATGCCAACTTTTGACATCATAGGAAAAGGGTCATCAAACTTTGGACTTGAAGATCCCCTTTTCAAAGGAAAAAATGTCATGAGGCCAAATCAAGAAGTTCTTGCAGGGAACAAGGAGAAAGAATTTCTAAAGTTTTCGCCTCTTGGAACTGAAAGCATCATCAAGCAAGAAGAAGATATATGGAACGCCAGCTTTAATATTAGAGGCACTCCTTCAAGCTCTGGTAATGAACCGTGGGGAGATCCAATCAATTATGAAGTGCCAGAATTTGGAGATACAAGTGGAATGGCAAACATGTGGAATATTAGCTCTCTGCAAGCAAAAGGAAGTTTCCCAACTGATGAATCTCCTGACACAAAGTCAAGCTGA 1479 0.4178 MNPKQVNDLKGNAKAPEGTTGFSPIQLGSDEAFSSSSTLLMGDVGLSGSLPLSPHEALSTMNLTSSSKFESVPQPLECLQVNPVPPFLSKTFDLVDDPSLDPIISWGSTGESFTVWDPTQFARHILPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRGKRHLLKNIQRRKSPQSQDVISYIDIGPSTNAEKSGLEVEIERLRKERSVLMQEVVELQQQQQTTVDRARQVNQRLQFAEQIQKQMVSFLAKLFENPDSLTHIKHEKEQRDIGSPRGRRKLIKQNQRQTGISDSLKKVQIVRHQPNWRNITISSEIPYPNPVSIEQSPHYLSQGLAREMSEGAKNLTLQFENVVSDELAVSVTHEVMPTFDIIGKGSSNFGLEDPLFKGKNVMRPNQEVLAGNKEKEFLKFSPLGTESIIKQEEDIWNASFNIRGTPSSSGNEPWGDPINYEVPEFGDTSGMANMWNISSLQAKGSFPTDESPDTKSS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3986g00030 492 SMART hsfneu3 83 176 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3986g00030 492 Pfam HSF-type DNA-binding 87 176 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3986g00030 492 SUPERFAMILY "Winged helix" DNA-binding domain 83 176 IPR036390 -
Gabi3986g00030 492 PRINTS Heat shock factor (HSF) domain signature 138 150 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3986g00030 492 PRINTS Heat shock factor (HSF) domain signature 125 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3986g00030 492 PRINTS Heat shock factor (HSF) domain signature 87 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3986g00030 492 Gene3D - 79 177 IPR036388 -
Gabi3986g00030 492 Coils Coil 198 225 - -
Gabi3986g00030 492 ProSitePatterns HSF-type DNA-binding domain signature. 126 150 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3986g00030 492 FunFam Heat stress transcription factor B-4 79 177 - -
Gabi3986g00030 492 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 73 296 IPR027725 -
Gabi3986g00030 492 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3986g00030 Gabi-Chr3986 256145 258486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3986g00030 72 319 HSF AT5G03720 57.087 2.09e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi3986g00030 HSF_DNA-bind 2.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3986g00030 K09419 - gmx:100788429 492.271