Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3986g00028 ATGGATCCCTCTTCTGTTTCTTCTCTTGAAATAGTTTTGGTGGATAGACGTAGTGATCCTAGCTTAAAAGAATTGCAAAACAAAGTACATGACATTTCTTGTAGCTGCATGACGACAACAGAGGTTGTAGACCATCTTGCCAAGCTGGTTTGCAATTACATGGGGGGTTCAGCTTCAGTTTGGGAAGATGAATTTTTTCCCGTCTGGAGGGAGTGCATTAATGATCTGAGAGATCGCTTAGGATCTGCTGTTGTTCCAATTGGCAGTCTATCTATTGGACTCTGCAGGCATCGTGCTATATTATTCAAAGTACTAGCTGACACAATTGATTTACCGTGTCGAATTGCAAAGGGTTGTAAATATTGCTCAAGAGATGATGCCTCCTCATGTATTGTTCGATTTGAGCTTGACAGGGAATATATGGTTGATCTAATTGGGAAGCCAGGTTGCTTGTGCGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGCTTTTCAAGACTTAAACCAGCTGAACCTACCATTGATTTCAGGTCATTGGCCAAACAGTATTTCTCAGATTGTCTATCTCTTGAGCTTGTCTTTGATAATGGTTCTGCAGAACAGAAGTGCAGAGACAGGAATAACCGTGGGCCAATTCCAAATGATAGCAACAGAGGTTCTCTCATTCGTCCGTACCCACAAGCTTACCATCCAAGCCGGCATGATCAAGGTTCTGAAACATTTGAATCATGTAACCTTCCTCAGAACGTTGTAGAACTGACAACTGTGGAAAAGGATCCACTGCCTTTAAAGCATAACCTTCCTGGTCATAGAGATGCACAAACCCCATTAGCACTAAAAAATTTCAATGTTGATGTTATTGAGGGTAGGGGTTTTGTTGAAGGAAGTCAACTGATTCCTAGCAAACCTACTAGAGAGCTTGCCCTTGATATGGAGGATTTGGACATACCGTGGAGTGATCTTGTTTTAAAAGAGAGAATAGGATCAGGTTCGTTTGGAACTGTACATCATGCTGAGTGGAATGGCTCAGAGGTTGCTGTGAAAATTCTGATGGAACAGGACTTTCATGGTGAACGCTTTAAGGAATTCCTGAGGGAGGTTGCAATTATGAAACATTTGCGGCATCCAAACATCGTTTTATTTATGGGTGCTGTCATTAAGCCTCCTAATTTATCAATTGTCACAGAATATTTGTCAAGGGGGAGCTTATATAGGCTGTTGCATAAACCTGGTGCCAGAGAGGTGTTGGATGAGAGGCGTAGGCTTAGTATGGCTTATGATGTGGCTAAGGGGATGAATTATCTTCATAAACGTAATCCTCCCATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTCGTTGACAAGAAATATACAGTGAAGGTATGTGATTTTGGGCTTTCCCGACTAAAGGCAAATACATTTCTTTCATCCAAGTCAGCTGCAGGGACTCCTGAATGGATGGCTCCAGAAGTTCTTCGTGACGAGCCTTCCAATGAGAAGTCAGATGTTTACAGCTTTGGTGTCATCTTGTGGGAGATTGCAACATTGCAACAGCCGTGGGGTAATTTGAATCCAGCACAGGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATGCCACATGATTTGAATCCACGATTAGCCTCAATAATTGAGGCTTGCTGGGCCAACGAGTCCTGGAAACGCCCGTCTTTTTCAAGTATTATGGATTCTTTGAAAGTATTGCTCAAAATCCATACACCTCAACCTGGTCGTCCAAACATGCCATTGCTTACCTGA 1812 0.4266 MDPSSVSSLEIVLVDRRSDPSLKELQNKVHDISCSCMTTTEVVDHLAKLVCNYMGGSASVWEDEFFPVWRECINDLRDRLGSAVVPIGSLSIGLCRHRAILFKVLADTIDLPCRIAKGCKYCSRDDASSCIVRFELDREYMVDLIGKPGCLCEPDSLLNGPSSISFSSPLRFSRLKPAEPTIDFRSLAKQYFSDCLSLELVFDNGSAEQKCRDRNNRGPIPNDSNRGSLIRPYPQAYHPSRHDQGSETFESCNLPQNVVELTTVEKDPLPLKHNLPGHRDAQTPLALKNFNVDVIEGRGFVEGSQLIPSKPTRELALDMEDLDIPWSDLVLKERIGSGSFGTVHHAEWNGSEVAVKILMEQDFHGERFKEFLREVAIMKHLRHPNIVLFMGAVIKPPNLSIVTEYLSRGSLYRLLHKPGAREVLDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWEIATLQQPWGNLNPAQVVAAVGFKGKRLEMPHDLNPRLASIIEACWANESWKRPSFSSIMDSLKVLLKIHTPQPGRPNMPLLT 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3986g00028 603 SMART serkin_6 329 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3986g00028 603 FunFam Serine/threonine-protein kinase isoform 1 319 407 - -
Gabi3986g00028 603 ProSiteProfiles Protein kinase domain profile. 329 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3986g00028 603 PRINTS Tyrosine kinase catalytic domain signature 510 532 IPR001245 GO:0004672|GO:0006468
Gabi3986g00028 603 PRINTS Tyrosine kinase catalytic domain signature 491 501 IPR001245 GO:0004672|GO:0006468
Gabi3986g00028 603 PRINTS Tyrosine kinase catalytic domain signature 444 462 IPR001245 GO:0004672|GO:0006468
Gabi3986g00028 603 PRINTS Tyrosine kinase catalytic domain signature 554 576 IPR001245 GO:0004672|GO:0006468
Gabi3986g00028 603 PRINTS Tyrosine kinase catalytic domain signature 403 416 IPR001245 GO:0004672|GO:0006468
Gabi3986g00028 603 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 90 584 - -
Gabi3986g00028 603 MobiDBLite consensus disorder prediction 210 229 - -
Gabi3986g00028 603 ProSitePatterns Protein kinases ATP-binding region signature. 335 356 IPR017441 GO:0005524
Gabi3986g00028 603 SUPERFAMILY Protein kinase-like (PK-like) 310 583 IPR011009 -
Gabi3986g00028 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Gabi3986g00028 603 Pfam Ethylene-responsive protein kinase Le-CTR1 5 152 - -
Gabi3986g00028 603 CDD STKc_MAP3K-like 335 583 - -
Gabi3986g00028 603 FunFam Serine/threonine-protein kinase CTR1 408 593 - -
Gabi3986g00028 603 Gene3D Transferase(Phosphotransferase) domain 1 408 594 - -
Gabi3986g00028 603 Pfam Protein tyrosine and serine/threonine kinase 330 583 IPR001245 GO:0004672|GO:0006468
Gabi3986g00028 603 Gene3D Phosphorylase Kinase; domain 1 322 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3986g00028 Gabi-Chr3986 236685 253225 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3986g00028 1 599 MAP Kinase Kinase Kinase AT5G03730 67.219 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi3986g00028 PK_Tyr_Ser-Thr 3.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3986g00028 K14510 - gmx:100800648 957.592