Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3986g00024 ATGGAAATGCCCGCTAGAAGATCCAACTACTCACTCCTCAGCCAAACTCCCGACGACCAGTTCGGCGCAACCGCTCCGCCTCCGTTGTTCGACTCTTCATCCGGTGACGGCAAGAACAACAAGAGCAAGTTAGACAGAGCCTTTGACTGCGACTCGGTTGCCGATCATAGAGTCGCTCAGCAGGGGAATCGGATCGGGAATTTGTACGCCTCGATCGGGTTGCAGAGGCAGTCCAGCGGTAGCAGTTTCGCTGAGAGCTCGCTGTCCGGCGAGTTTTATGCTCCGACTCTGTCAATCGTCTCTGCCAACGAGATCGATGCCTTTGGCTACGCTCACGATGATGGACTCAAATTCGGTGGAGGTGTTGGCGGTGGCGAGACCAGAACCAAGCTTCCGGAGATTGCGGCGGCGAGGAACGAAGGGTCTTTTGGTAAGAGCTGGGCGCAGCAGACAGAAGAGAATTATCAGTTACAGATGGCTTTTGCACTTCGGCTCTCCACTGAGGCGACGTGTGCTGATGATCCCAATTTTCTGGATTCAGTGCCAAATGAATCCACGTTAAGGTCCTCGTTGTCATGTTCAGCAGAGGCAATGTCGCATAGGTTCTGGGTAAATGGCTGCCTATTATACTTCGACAAAATTCCTGATGGCTTTTATCTAATTCACGGGATGGATCCCTATATATGGACCATGTGCACTGATCTGCAGGAAAATGGCCGAATTCCATCAGTTGATACACTAAAGTCTATGGATCCCTCTTCTGTTTCTTCTCTTGAAATAGTTTTGGTGGATAGACGTAGTGATCCTAGCTTAAAAGAATTGCAAAACAAAGTACATGACATTTCTTGTAGCTGCATGACGACAACAGAGGTTGTAGACCATCTTGCCAAGCTGGTTTGCAATTACATGGGGGGTTCAGCTTCAGTTTGGGAAGATGAATTTTTTCCCGTCTGGAGGGAGTGCATTAATGATCTGAGAGATCGCTTAGGATCTGCTGTTGTTCCAATTGGCAGTCTATCTATTGGACTCTGCAGGCATCGTGCTATATTATTCAAAGTACTAGCTGACACAATTGATTTACCGTGTCGAATTGCAAAGGGTTGTAAATATTGCTCAAGAGATGATGCCTCCTCATGTATTGTTCGATTTGAGCTTGACAGGGAATATATGGTTGATCTAATTGGGAAGCCAGGTTGCTTGTGCGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGCTTTTCAAGACTTAAACCAGCTGAACCTACCATTGATTTCAGGTCATTGGCCAAACAGTATTTCTCAGATTGTCTATCTCTTGAGCTTGTCTTTGATAATGGTTCTGCAGAACAGAAGTGCAGAGACAGGAATAACCGTGGGCCAATTCCAAATGATAGCAACAGAGGTTCTCTCATTCGTCCGTACCCACAAGCTTACCATCCAAGCCGGCATGATCAAGGTTCTGAAACATTTGAATCATGTAACCTTCCTCAGAACGTTGTAGAACTGACAACTGTGGAAAAGGATCCACTGCCTTTAAAGCATAACCTTCCTGGTCATAGAGATGCACAAACCCCATTAGCACTAAAAAATTTCAATGTTGATGTTATTGAGGGTAGGGGTTTTGTTGAAGGAAGTCAACTGATTCCTAGCAAACCTACTAGAGAGCTTGCCCTTGATATGGAGGATTTGGACATACCGTGGAGTGATCTTGTTTTAAAAGAGAGAATAGGATCAGGTTCGTTTGGAACTGTACATCATGCTGAGTGGAATGGCTCAGAGGTTGCTGTGAAAATTCTGATGGAACAGGACTTTCATGGTGAACGCTTTAAGGAATTCCTGAGGGAGGTTGCAATTATGAAACATTTGCGGCATCCAAACATCGTTTTATTTATGGGTGCTGTCATTAAGCCTCCTAATTTATCAATTGTCACAGAATATTTGTCAAGGGGGAGCTTATATAGGCTGTTGCATAAACCTGGTGCCAGAGAGGTGTTGGATGAGAGGCGTAGGCTTAGTATGGCTTATGATGTGGCTAAGGGGATGAATTATCTTCATAAACGTAATCCTCCCATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTCGTTGACAAGAAATATACAGTGAAGGTATGTGATTTTGGGCTTTCCCGACTAAAGGCAAATACATTTCTTTCATCCAAGTCAGCTGCAGGGACTCCTGAATGGATGGCTCCAGAAGTTCTTCGTGACGAGCCTTCCAATGAGAAGTCAGATGTTTACAGCTTTGGTGTCATCTTGTGGGAGATTGCAACATTGCAACAGCCGTGGGGTAATTTGAATCCAGCACAGGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATGCCACATGATTTGAATCCACGATTAGCCTCAATAATTGAGGCTTGCTGGGCCAACGAGTCCTGGAAACGCCCGTCTTTTTCAAGTATTATGGATTCTTTGAAAGTATTGCTCAAAATCCATACACCTCAACCTGGTCGTCCAAACATGCCATTGCTTACCTGA 2559 0.4529 MEMPARRSNYSLLSQTPDDQFGATAPPPLFDSSSGDGKNNKSKLDRAFDCDSVADHRVAQQGNRIGNLYASIGLQRQSSGSSFAESSLSGEFYAPTLSIVSANEIDAFGYAHDDGLKFGGGVGGGETRTKLPEIAAARNEGSFGKSWAQQTEENYQLQMAFALRLSTEATCADDPNFLDSVPNESTLRSSLSCSAEAMSHRFWVNGCLLYFDKIPDGFYLIHGMDPYIWTMCTDLQENGRIPSVDTLKSMDPSSVSSLEIVLVDRRSDPSLKELQNKVHDISCSCMTTTEVVDHLAKLVCNYMGGSASVWEDEFFPVWRECINDLRDRLGSAVVPIGSLSIGLCRHRAILFKVLADTIDLPCRIAKGCKYCSRDDASSCIVRFELDREYMVDLIGKPGCLCEPDSLLNGPSSISFSSPLRFSRLKPAEPTIDFRSLAKQYFSDCLSLELVFDNGSAEQKCRDRNNRGPIPNDSNRGSLIRPYPQAYHPSRHDQGSETFESCNLPQNVVELTTVEKDPLPLKHNLPGHRDAQTPLALKNFNVDVIEGRGFVEGSQLIPSKPTRELALDMEDLDIPWSDLVLKERIGSGSFGTVHHAEWNGSEVAVKILMEQDFHGERFKEFLREVAIMKHLRHPNIVLFMGAVIKPPNLSIVTEYLSRGSLYRLLHKPGAREVLDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWEIATLQQPWGNLNPAQVVAAVGFKGKRLEMPHDLNPRLASIIEACWANESWKRPSFSSIMDSLKVLLKIHTPQPGRPNMPLLT 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3986g00024 852 FunFam Serine/threonine-protein kinase CTR1 657 842 - -
Gabi3986g00024 852 Gene3D Transferase(Phosphotransferase) domain 1 657 843 - -
Gabi3986g00024 852 MobiDBLite consensus disorder prediction 458 478 - -
Gabi3986g00024 852 FunFam Serine/threonine-protein kinase isoform 1 568 656 - -
Gabi3986g00024 852 MobiDBLite consensus disorder prediction 1 43 - -
Gabi3986g00024 852 CDD STKc_MAP3K-like 584 832 - -
Gabi3986g00024 852 SUPERFAMILY Protein kinase-like (PK-like) 560 832 IPR011009 -
Gabi3986g00024 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 699 711 IPR008271 GO:0004672|GO:0006468
Gabi3986g00024 852 ProSitePatterns Protein kinases ATP-binding region signature. 584 605 IPR017441 GO:0005524
Gabi3986g00024 852 ProSiteProfiles Protein kinase domain profile. 578 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3986g00024 852 Gene3D Phosphorylase Kinase; domain 1 571 656 - -
Gabi3986g00024 852 Pfam Protein tyrosine and serine/threonine kinase 579 832 IPR001245 GO:0004672|GO:0006468
Gabi3986g00024 852 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 181 833 - -
Gabi3986g00024 852 PRINTS Tyrosine kinase catalytic domain signature 652 665 IPR001245 GO:0004672|GO:0006468
Gabi3986g00024 852 PRINTS Tyrosine kinase catalytic domain signature 693 711 IPR001245 GO:0004672|GO:0006468
Gabi3986g00024 852 PRINTS Tyrosine kinase catalytic domain signature 759 781 IPR001245 GO:0004672|GO:0006468
Gabi3986g00024 852 PRINTS Tyrosine kinase catalytic domain signature 740 750 IPR001245 GO:0004672|GO:0006468
Gabi3986g00024 852 PRINTS Tyrosine kinase catalytic domain signature 803 825 IPR001245 GO:0004672|GO:0006468
Gabi3986g00024 852 Pfam Ethylene-responsive protein kinase Le-CTR1 195 401 - -
Gabi3986g00024 852 SMART serkin_6 578 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3986g00024 Gabi-Chr3986 236041 253225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3986g00024 1 848 MAP Kinase Kinase Kinase AT5G03730 64.713 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi3986g00024 PK_Tyr_Ser-Thr 8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3986g00024 K14510 - gmx:100810555 1263.06