Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3986g00022 ATGAGAAGTGAAGGTGTTGAAGTAAAAAGTGGAGAATCTCTCAAGGTTGATCCAGGAGACGACAAGATTGTCCACCTTTCAATGGCATGTCTGGGTGAGGTCAATGTGCGTGAACCAGTGTCCCTGTATGTGAAGTTTGATAACCAGAAGCTTGCAATTGGCACACTTTCTTCTCATCAATTTCCTCAGATATCTTATGATTTGATATTTGAGAAGGAATTTGAGCTATCCCACAACTGGAAAAATGGGAGTGTCTTCTTTACTGGATATAAAGCCGAATCTCAGTTGGAATCTGATAATGATGAAGATTCTGATGATTTCGATGGTGAGGATTTTCCACTTAGTGCTGCCAATGGGAGACCTGAGTTTGAGCTGAAGAATGGTGTCAAACCTGATGCAAATGAAGCTAAACAAAAGGAGAAGATAGCGGATCCCAGAAAGAATGAGAAGGCCAATGAAAAGGATGCAAATGATGATGATGAAGAAGAAGATTCGTCCAGATCTGAGTCTGATGAGGATTCTAGTGAAGATGAGCCCATGGCGAATGGTGAGCAAGAAAGTAGTGAAGATGAAGATGATAGTGACAATGACGAAGAATCCGATGATGAGGAGACTCCGAAGAAGGCTGAAGTGAGCAATAAGAGGGTTCTTGACTCTTCCAAGAAAACACCTGTTCCTGTGAAGAAGGCAAAATTTGTTACTCCTCAGAAGACTGATGGCAAGAATGGAGGTCATGTTGCAACTCCTCACCCTTCTAAGCAAGCTGGTAAGGCAACTGCAAATAACAGAGAGCCGGTGAAGCTGCAGACTCCCAAGTCAGTTGGGGATTACAGCTGCAAGCCTTGCAACAGGTCATTTAAGACAGAAGATGCCTTAAATTCTCATAATCGGGCCAAGCACACTGCTGCTAAGTGA 915 0.4317 MRSEGVEVKSGESLKVDPGDDKIVHLSMACLGEVNVREPVSLYVKFDNQKLAIGTLSSHQFPQISYDLIFEKEFELSHNWKNGSVFFTGYKAESQLESDNDEDSDDFDGEDFPLSAANGRPEFELKNGVKPDANEAKQKEKIADPRKNEKANEKDANDDDEEEDSSRSESDEDSSEDEPMANGEQESSEDEDDSDNDEESDDEETPKKAEVSNKRVLDSSKKTPVPVKKAKFVTPQKTDGKNGGHVATPHPSKQAGKATANNREPVKLQTPKSVGDYSCKPCNRSFKTEDALNSHNRAKHTAAK 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3986g00022 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 277 304 IPR013087 -
Gabi3986g00022 304 ProSitePatterns Zinc finger C2H2 type domain signature. 279 300 IPR013087 -
Gabi3986g00022 304 MobiDBLite consensus disorder prediction 155 204 - -
Gabi3986g00022 304 SMART c2h2final6 277 300 IPR013087 -
Gabi3986g00022 304 MobiDBLite consensus disorder prediction 125 154 - -
Gabi3986g00022 304 MobiDBLite consensus disorder prediction 254 268 - -
Gabi3986g00022 304 Gene3D Nucleoplasmin core domain 2 96 - -
Gabi3986g00022 304 MobiDBLite consensus disorder prediction 96 304 - -
Gabi3986g00022 304 FunFam Histone deacetylase HDT1 1 96 - -
Gabi3986g00022 304 Pfam C2H2-type zinc finger 277 300 - -
Gabi3986g00022 304 Pfam Nucleoplasmin-like domain 5 90 IPR041232 -
Gabi3986g00022 304 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3986g00022 Gabi-Chr3986 181325 190146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3986g00022 1 303 C2H2 Transcription Factor Family AT5G03740 40.385 2.83e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3986g00022 NPL 2.6e-07 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3986g00022 - - ccaj:109796568 384.415