Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3981g00002 ATGCATAGCTCGAGGCAATCCTTCTACATCTCTTCCTCTTCTCCTTCTTCTTCTTGTTCTTTGTTTTGTATCATTCTCCTCCACTCTACTCTTCTCTATGGCCTTGCCTTCTCTGCTAACCATGAAGCCTCAATTCTCATGTCCTGGCTCCATAGTTCTGCATCACCACCCCCTCCATCTTTCTCTAACTGGAACATCCTTGATACCAATCCATGCAACTGGACCTCCATAACATGCTCCTCACTAGGCTTTGTCACTGAAATCAATATACAATCCATCCCTCTTGAGCTTCCCATACCTTCTAATCTCTCTTCATTTCTCTTTCTTCACAAGCTTGTCATTTCTGATGCCAATCTCACTGGAACCATCCCTGTTGACATTGGTGATTACTCTTCCCTCACTGTCATTGACCTTAGCTCCAACAATCTTGTTGGCTCTATTCCTGCAACTATTGGCAAACTCCAGAAACTTGAGAACTTGTCTTTGAACTCCAACCAGCTTACTGGAAGAATCCCAGTTGAGCTAAGCAACTGTGTTGGCCTCAAAAATCTACTTCTTTTTGATAATCAGCTAGGTGGTACTATTCCACCTGAGCTAGGAAAGTTGTCAAAACTTGAGGTCCTCAGAGCAGGAGGAAACAAAGATATAGTTGGGAAGATCCCTGAAGAGATTGGAGAATGCAGCAATTTGACTGTGTTGGGGTTGGCTGATACCAGAATATCTGGTTCTTTGCCTGCTTCTTTGGGTCAGCTTAGTAAGCTTCAGACTTTGTCCATCTATACAACAATGCTATCTGGTGAGATTCCACCAGAGTTAGGTAACTGTTCTGAACTTGTTGACTTGTTCCTATATGAAAATAGTCTATCAGGGAGTGTTCCACCTGAGCTTGGCAAGCTCCAAAAGCTGCAACAGTTGTTTTTGTGGCAGAATAGTCTTGTGGGGCCTATCCCAGAAGAGATTGGTAACTGTACAAGCTTGAGAAAAATTGATCTCTCTTTGAATTCTCTGTCTGGAACTATACCATTGTCTTTGGGGGGTCTTTCAGAACTTGAAGAGTTTATGATTAGTGATAATAATGTGTCTGGTTCAATACCTTCCAGTCTTTCAAATGCTAAAAATCTTCAACAGTTGCAAGTTGACACAAATCAGCTCTCAGGCTTGGTTCCACCAGAGCTTGGACAGTTGTCAAATCTCATGGTGTTCTTTGCATGGCAGAACCAGCTTGAAGGAAGCATTCCTTCCACTTTGGGAAACTGTAGTAACCTACAAGCACTAGACTTGTCTCGCAATGCACTCACTGGCAGCATTCCTGTTGGCCTATTTCAGCTCCAGAACCTCACAAAACTGCTTCTAATTTCCAATGATATATCAGGTTTTATACCATCAGAAATAGGTAGTTGCAGCTCTCTTATAAGGTTGAGGCTTGGAAACAACAGGATTACTGGTAGCATTCCCAAGACAATAGGCAACCTCAAGAGCTTGAATTTCTTAGATCTCTCCGGGAACCACCTATCTGGGCCAGTGCCTGATGAGATTAGAAGCTGCACAGAACTGCAAATGATAGACTTCAGCAGTAACAACTTAGAAGGTCCACTGCCTAATTCTTTGTCATCACTATCTGCACTTCAGGTATTGGATGCTTCTTCTAACAAGTTTTCAGGTCCAATACCAGCAAGTTTAGGTCGTCTTGTTTCTCTAAATAAGCTAATCCTTGACAATAACTTGTTTTCTGGACCAATTCCTGCATCACTGAGCCTATGTTCCAATCTCCAACTACTTGATCTTAGTAGCAATCAGTTCACTGGAAGCATACCAGCCGAGCTGGGCCATATTGAGACACTGGAAATTGCTCTTAATCTTAGTTGCAATTCACTCAGTGGCATAATCCCAGCTCAGATATCTGCTCTTAACAAGCTTTCTATATTGGACCTTTCACATAACCAGTTGGAAGGAGATTTGCAACCTCTTGCAGTGCTAGATAACCTTGTCTCCCTCAATGTTTCTTACAATAAATTTAAAGGCTATCTTCCAGATAACAAGCTTTTCAGGCAGTTATCGTCAAAAGACCTCACTGGGAATCAAGGGCTTTGTACTTCAGGTCAGGACTCATGCTTTGCAAAGGATTCTGGTGTGGCAGTGAATGGAAATGATGTAAGGAAATCACGAAGGCTTAAGCTAGCCATTGGATTGTTGATAGCCTTAACAGTGATAATGATAGTTATGGGGATAACTGCTGTGATCAAAGCAAGAAGAACCATTAGAGATGATGATTCAGAATTAGGGGACTCATGGCCATGGCAATTCATACCATTCCAGAAGCTAAATTTCTCAGTGGAACAAGTACTGAGATGTTTGGTTGATAGAAACATAATAGGAAAGGGATGTTCTGGTGTTGTTTATCGAGCTGAAATGGATAATGGTGAAGTCATAGCAGTGAAGAAACTGTGGCAAATAACAACTGATGCAGGAGAGGCAGTTAAGGATGAAAAAATTGGAGTTCGTGACTCATTCTCAGCTGAGGTGAAGGCCCTTGGCTCAATCCGTCATAAGAACATTGTAAGATTCTTGGGTTGTTGTTGGAACAGAAAAACAAGATTGCTTATTTTTGATTATATGCCAAATGGAAGTTTGAGTAGCCTACTTCATGAGAGGACTGGAAATTCTCTGGAATGGGAACTTAGGTACCGAATATTGTTAGGTGCTGCAGAAGGCCTTGCATATCTACATCATGACTGTGTCCCTCCTATAGTCCACAGAGATATCAAAGCCAATAACATCCTCATTGGCCTTGAATTTGAACCTTACATTGCTGACTTTGGCTTGGCTAAGCTTGTTGATGATGGTGATTTTGGTCGTTCTTCCAATACAGTTGCTGGTTCCTATGGATATATTGCTCCAGAATATGGCTATATGATGAAGATCACAGAGAAGAGTGACGTTTATAGCTATGGTATAGTTTTGTTAGAAGTCTTGACAGGTAAGCAACCAATTGATCCAACCATACCAGATGGTCTACATGTTGTTGATTGGGTGAGACAGAAAAGGGGTCTTGAAGTACTTGATCCAAGCTTACTCTCTAGACCAGAATCAGAAATAGAGGAAATGATGCAGGCATTGGGCATAGCCTTATTGTGTGTAAATTCATCCCCGGATGAAAGGCCAACAATGAGAGATATTGCTGCAATGCTCAAGGAGATAAAGCATGAAAGGGAGGAATATGCAAAATTTGATGTGCTTATAAAGGGGTCTCCTGCAAATGATGTGTGTGGGAATAAAAGCAATGGTGTAGTTCTTGCAACATCTTCATCAGCATCAGTCATGCAAACTTTGAATACAAAAAGCAATAACACAAGCTTCTCCGTGTCTTCACTGCTTCATTCATCTTCAAGTGGCAAGCTTGGTTTCAAATGA 3411 0.416 MHSSRQSFYISSSSPSSSCSLFCIILLHSTLLYGLAFSANHEASILMSWLHSSASPPPPSFSNWNILDTNPCNWTSITCSSLGFVTEINIQSIPLELPIPSNLSSFLFLHKLVISDANLTGTIPVDIGDYSSLTVIDLSSNNLVGSIPATIGKLQKLENLSLNSNQLTGRIPVELSNCVGLKNLLLFDNQLGGTIPPELGKLSKLEVLRAGGNKDIVGKIPEEIGECSNLTVLGLADTRISGSLPASLGQLSKLQTLSIYTTMLSGEIPPELGNCSELVDLFLYENSLSGSVPPELGKLQKLQQLFLWQNSLVGPIPEEIGNCTSLRKIDLSLNSLSGTIPLSLGGLSELEEFMISDNNVSGSIPSSLSNAKNLQQLQVDTNQLSGLVPPELGQLSNLMVFFAWQNQLEGSIPSTLGNCSNLQALDLSRNALTGSIPVGLFQLQNLTKLLLISNDISGFIPSEIGSCSSLIRLRLGNNRITGSIPKTIGNLKSLNFLDLSGNHLSGPVPDEIRSCTELQMIDFSSNNLEGPLPNSLSSLSALQVLDASSNKFSGPIPASLGRLVSLNKLILDNNLFSGPIPASLSLCSNLQLLDLSSNQFTGSIPAELGHIETLEIALNLSCNSLSGIIPAQISALNKLSILDLSHNQLEGDLQPLAVLDNLVSLNVSYNKFKGYLPDNKLFRQLSSKDLTGNQGLCTSGQDSCFAKDSGVAVNGNDVRKSRRLKLAIGLLIALTVIMIVMGITAVIKARRTIRDDDSELGDSWPWQFIPFQKLNFSVEQVLRCLVDRNIIGKGCSGVVYRAEMDNGEVIAVKKLWQITTDAGEAVKDEKIGVRDSFSAEVKALGSIRHKNIVRFLGCCWNRKTRLLIFDYMPNGSLSSLLHERTGNSLEWELRYRILLGAAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGIVLLEVLTGKQPIDPTIPDGLHVVDWVRQKRGLEVLDPSLLSRPESEIEEMMQALGIALLCVNSSPDERPTMRDIAAMLKEIKHEREEYAKFDVLIKGSPANDVCGNKSNGVVLATSSSASVMQTLNTKSNNTSFSVSSLLHSSSSGKLGFK 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3981g00002 1136 Gene3D Ribonuclease Inhibitor 214 276 IPR032675 -
Gabi3981g00002 1136 Gene3D Ribonuclease Inhibitor 614 691 IPR032675 -
Gabi3981g00002 1136 Gene3D Ribonuclease Inhibitor 277 340 IPR032675 -
Gabi3981g00002 1136 MobiDBLite consensus disorder prediction 1116 1130 - -
Gabi3981g00002 1136 FunFam Nuclear pore complex protein NUP107 39 192 - -
Gabi3981g00002 1136 SMART LRR_typ_2 154 178 IPR003591 -
Gabi3981g00002 1136 SMART LRR_typ_2 659 684 IPR003591 -
Gabi3981g00002 1136 SMART LRR_typ_2 587 611 IPR003591 -
Gabi3981g00002 1136 SMART LRR_typ_2 539 563 IPR003591 -
Gabi3981g00002 1136 SMART LRR_typ_2 491 515 IPR003591 -
Gabi3981g00002 1136 SMART LRR_typ_2 347 371 IPR003591 -
Gabi3981g00002 1136 SMART LRR_typ_2 419 443 IPR003591 -
Gabi3981g00002 1136 SMART LRR_typ_2 299 323 IPR003591 -
Gabi3981g00002 1136 SMART LRR_typ_2 636 655 IPR003591 -
Gabi3981g00002 1136 Pfam Leucine rich repeat 132 191 IPR001611 GO:0005515
Gabi3981g00002 1136 Pfam Leucine rich repeat 445 504 IPR001611 GO:0005515
Gabi3981g00002 1136 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 330 1063 - -
Gabi3981g00002 1136 Gene3D Ribonuclease Inhibitor 38 213 IPR032675 -
Gabi3981g00002 1136 ProSiteProfiles Protein kinase domain profile. 785 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3981g00002 1136 Gene3D Transferase(Phosphotransferase) domain 1 872 1082 - -
Gabi3981g00002 1136 SUPERFAMILY L domain-like 49 407 - -
Gabi3981g00002 1136 ProSitePatterns Protein kinases ATP-binding region signature. 791 814 IPR017441 GO:0005524
Gabi3981g00002 1136 SUPERFAMILY Protein kinase-like (PK-like) 763 1064 IPR011009 -
Gabi3981g00002 1136 SMART serkin_6 785 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3981g00002 1136 Pfam Leucine rich repeat N-terminal domain 39 80 IPR013210 -
Gabi3981g00002 1136 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 872 1081 - -
Gabi3981g00002 1136 ProSitePatterns Serine/Threonine protein kinases active-site signature. 916 928 IPR008271 GO:0004672|GO:0006468
Gabi3981g00002 1136 Gene3D Ribonuclease Inhibitor 533 613 IPR032675 -
Gabi3981g00002 1136 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 768 871 - -
Gabi3981g00002 1136 MobiDBLite consensus disorder prediction 1116 1136 - -
Gabi3981g00002 1136 ProSiteProfiles Leucine-rich repeat profile. 638 660 IPR001611 GO:0005515
Gabi3981g00002 1136 Gene3D Phosphorylase Kinase; domain 1 771 871 - -
Gabi3981g00002 1136 PRINTS Leucine-rich repeat signature 636 649 - -
Gabi3981g00002 1136 PRINTS Leucine-rich repeat signature 422 435 - -
Gabi3981g00002 1136 Gene3D Ribonuclease Inhibitor 436 532 IPR032675 -
Gabi3981g00002 1136 Gene3D Ribonuclease Inhibitor 341 435 IPR032675 -
Gabi3981g00002 1136 Pfam Protein tyrosine and serine/threonine kinase 789 1062 IPR001245 GO:0004672|GO:0006468
Gabi3981g00002 1136 FunFam LRR receptor-like serine/threonine-protein kinase 537 612 - -
Gabi3981g00002 1136 FunFam Putative LRR receptor-like serine/threonine-protein kinase 617 702 - -
Gabi3981g00002 1136 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 438 532 - -
Gabi3981g00002 1136 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 214 437 - -
Gabi3981g00002 1136 SUPERFAMILY RNI-like 364 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3981g00002 Gabi-Chr3981 13985 17742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3981g00002 37 1082 Receptor kinase-like Gene Family AT5G56040 49.199 0.0 980
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3981g00002 PK_Tyr_Ser-Thr 8.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3981g00002 - - gmx:100818541 1838.54