Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3980g00038 ATGGAAGCAGCAGCATCCTCTTCTCAGAGAAAGTCGAAGAGGAAGCGAGCGGCGGCGGCAGCAGCGGATCCTGAACTCGAGCGTCTGAACTCGCTGCCGTGGAACCCCGCTCTTCCTCAACACGATGACGATGACTCTTTTGCCTTGTTCATTGGCTCCAATGAACTCGAAGGAGGTTTTCTTCAACTTGAGGAGATTGATGAGGCTGAGTATGGTTTGGATATTCCTGAGCCTGAAGGTGACAAGAGGAAGCAGAAGCCTAAACATAACAAAAATTTGAAGAAACAGAAGCAAGATGGAGTTGATGATGCTTGTAGCGATGTGCTTGAAGAGCAAGTCGAAGGAGAGTTGGTTAAAGATGAGGATACGAAGTCTCAAGTGAAGAAAAAGAAGAAGAAGAAGAAGAAAAACACTGCGGTTAAAGAGAACCTGAAGGTTGAGCAGTCAGATACTGGTTTAGATACTAATGTGAAGGATGATATTGGGGAAGACGACATTGATGAAACTGAATTTTATGCATGGAATGAGTTGAGGCTTCATCCTCTCCTAATGAAAGCAATATACAAGCTTGGCTTCAAGGAACCAACACCCATACAAAAGGCTTGTATTCCAGCTGCTGCGCATCAAGGGAAGGATATTGTTGGTGCTGCAGAGACAGGGTCTGGGAAAACACTTGCATTTGGTTTGCCCATTTTGCAACGCCTTTTGGAGGAGCGAGAGAAGGCTTCGAAGATGGTTGAAGAAAAGGGTGAAGAACCTGAAAAATTTGCTGCTACAGGCCTTTTGAGGGCTCTTATCATTGCTCCGACTAGAGAACTTGCACTTCAGGTCGCTGATCATCTGAAAGCAGTTGCCAAGTATATTAATGTTAGAGTGACCCCTATTGTTGGGGGGATTTTAGCAGAAAAGCAGGAGAGACTTTTAAAAGCAAGGCCTGAGATTGTGGTCGGGACACCTGGGAGGTTATGGGAACTTATGTCAAGTGGAGAAAAACATCTAGTTGAGTTACATTCACTGTCTTTCTTTGTGCTTGATGAGGCTGATCGAATGGTACAAAGTGGTCATTTTAAGGAGTTACAATCAATAATTGATATGCTTCCCATGTCCAATATCCCCACTGAAGATAATTTCCAATATGCACAAAATTGTCTTACAGTTTCTAGCTACCAAAGAAAGAAAAGGCAAACTCTTGTTTTTTCAGCAACTGTAGCACTGTCTTCTGATTTTCGCAAGAAGCTAAAGCACGGATCAATTAAACAGAAGCAATCATTGATAGATGGATTGAATTCCATAGAAACTCTTTCTGAGCGAGCAGGAATGAGATCCAATGCCGCAATTATTGATCTTACCAATCCGTCAGTATTAGCAGCTAAGCTTGAGGAATCATTTATTGAATGCAAGGAAGAAGATAAAGATGCCTATTTGTATTATATTTTGACTGTTCATGGACAAGGCCGCATGATAGTTTTTTGTACGTCAATTGCAGCTTTGCGCCATATTTCTTCTTTACTGCGCATTCTTGGCATAAATGTTTGGACTCTTCATGCACAAATGCAACAGCGAGCACGTTTAAAGGCCATGGATCGCTTTCGTGAAAATGAAAACGGCATTCTTGTTGCTACAGATGTTGCTGCAAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTCCACTACCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCTAGAGCTTCTGCCGAAGGTTGTAGCATTGCTTTAATCTCATCAAGAGATACGTCAAAGTTTGCTTCATTGTGCAAGTCATTTTCTAAGGATGCCTTTCAGCGATTTCCCTTAGAGAATTCATACCTGCCAGAGGTCCTCAAACGAATGTCTCTGGCGCGTCAAATAGACAAGATAACACGGAAGGATTCCCAGGTGAAGGCTGAGAAAAGCTGGTTTGATCGGAATGCTAACTTAGTGGAATTAGTTACAGAAAATTACAATAGTGAGGAGGAACAAGTGAACAAACATAAGCAAATGAAATCCAGCTCTAGACAATTGAAGAAATTGCAGGAGGAGCTCAACATGCTGATTTCACGTCCTTTACAATCAAAAACATTTTCACATCGATATTTAGCAGGGGCTGGTGTTACACCCCTCATGCAAGAACAACTGCAACAATTAGCAAGGCAAAAACTCAGTGATCACCAGGGTTCAGGACTAGGCAAAAAGGGAAAGTTGGTTGTGATTGGTCAAGATTGTGTGGAAGCACTTCAGGCCCTACGGAGTTCCGGTGAAGAGGTGCGCATGGATGTCAAGGATTTCACAGGAAAACAAAGAAATATGGAGAATTTAAAAAGAAAAAGAAAAGAGGAGAAGAAACGTTTGCGTGATCAGCGTAGAAAGAAGAGAAAGCTAAAGAAGCAGGACGAATTGAATTGTATACATAACTGA 2439 0.4227 MEAAASSSQRKSKRKRAAAAAADPELERLNSLPWNPALPQHDDDDSFALFIGSNELEGGFLQLEEIDEAEYGLDIPEPEGDKRKQKPKHNKNLKKQKQDGVDDACSDVLEEQVEGELVKDEDTKSQVKKKKKKKKKNTAVKENLKVEQSDTGLDTNVKDDIGEDDIDETEFYAWNELRLHPLLMKAIYKLGFKEPTPIQKACIPAAAHQGKDIVGAAETGSGKTLAFGLPILQRLLEEREKASKMVEEKGEEPEKFAATGLLRALIIAPTRELALQVADHLKAVAKYINVRVTPIVGGILAEKQERLLKARPEIVVGTPGRLWELMSSGEKHLVELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNIPTEDNFQYAQNCLTVSSYQRKKRQTLVFSATVALSSDFRKKLKHGSIKQKQSLIDGLNSIETLSERAGMRSNAAIIDLTNPSVLAAKLEESFIECKEEDKDAYLYYILTVHGQGRMIVFCTSIAALRHISSLLRILGINVWTLHAQMQQRARLKAMDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISSRDTSKFASLCKSFSKDAFQRFPLENSYLPEVLKRMSLARQIDKITRKDSQVKAEKSWFDRNANLVELVTENYNSEEEQVNKHKQMKSSSRQLKKLQEELNMLISRPLQSKTFSHRYLAGAGVTPLMQEQLQQLARQKLSDHQGSGLGKKGKLVVIGQDCVEALQALRSSGEEVRMDVKDFTGKQRNMENLKRKRKEEKKRLRDQRRKKRKLKKQDELNCIHN 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3980g00038 812 Gene3D - 454 699 IPR027417 -
Gabi3980g00038 812 CDD SF2_C_DEAD 459 588 - -
Gabi3980g00038 812 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 458 619 IPR001650 -
Gabi3980g00038 812 SMART ultradead3 191 421 IPR014001 -
Gabi3980g00038 812 PANTHER RNA HELICASE 129 771 - -
Gabi3980g00038 812 MobiDBLite consensus disorder prediction 1 46 - -
Gabi3980g00038 812 MobiDBLite consensus disorder prediction 767 784 - -
Gabi3980g00038 812 Pfam DEAD/DEAH box helicase 196 404 IPR011545 GO:0003676|GO:0005524
Gabi3980g00038 812 Coils Coil 770 804 - -
Gabi3980g00038 812 Pfam Helicase conserved C-terminal domain 470 578 IPR001650 -
Gabi3980g00038 812 SMART helicmild6 498 579 IPR001650 -
Gabi3980g00038 812 Coils Coil 232 252 - -
Gabi3980g00038 812 MobiDBLite consensus disorder prediction 71 143 - -
Gabi3980g00038 812 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 343 351 IPR000629 -
Gabi3980g00038 812 Gene3D - 120 417 IPR027417 -
Gabi3980g00038 812 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 421 IPR014001 -
Gabi3980g00038 812 MobiDBLite consensus disorder prediction 767 812 - -
Gabi3980g00038 812 Coils Coil 655 695 - -
Gabi3980g00038 812 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 172 200 IPR014014 GO:0003724
Gabi3980g00038 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 594 IPR027417 -
Gabi3980g00038 812 CDD DEADc_DDX24 183 448 - -
Gabi3980g00038 812 MobiDBLite consensus disorder prediction 785 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3980g00038 Gabi-Chr3980 417706 433652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3980g00038 173 620 Eukaryotic Initiation Factors Gene Family AT5G11200 28.361 1.95e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3980g00038 K14805 - gmx:100806018 1264.21