Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3980g00027 ATGCCTCGTGGGACGCTTGAAGTTATTTTGGTCAGCGCCAAAGGCCTTGAGGACAATAATTTTCTCTCTAGCATAGATCCTTATGTGATTCTAACTTACCGAACACAGGAGCACAAGAGCACTGTGCAAGAAGATGCTGGATCCAACCCACAATGGAATGAGAGCTTTCTTTTCACTATTTCTGACAGTGCTTCTGAACTTAATCTAAGGATTATGGATAAACGCAAGTTTAGAAAAGATGATTCTCTTGGCGAGGCAACAATTCCTTTGGATGCAGTGTTAGAAGAGGGTACCCTTCTTGAGACTGCTTACAATGTTGTGAAGGACCAAGAATTTTGTGGGGAGATTAAGGTGGCTCTCACTTTTACGCCTGAGGTAAGAGTTGCTGACCAGGGTTACAATGTAGAGGGGGATAGCTATGGTCAGAATGCAGAGGGGGAGAGCTATGGTGGATGGAGAGAATCAAGTAGGGAATTCTAA 480 0.4396 MPRGTLEVILVSAKGLEDNNFLSSIDPYVILTYRTQEHKSTVQEDAGSNPQWNESFLFTISDSASELNLRIMDKRKFRKDDSLGEATIPLDAVLEEGTLLETAYNVVKDQEFCGEIKVALTFTPEVRVADQGYNVEGDSYGQNAEGESYGGWRESSREF 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3980g00027 159 MobiDBLite consensus disorder prediction 137 159 - -
Gabi3980g00027 159 Gene3D C2 domain 2 125 IPR035892 -
Gabi3980g00027 159 Pfam C2 domain 4 105 IPR000008 -
Gabi3980g00027 159 PANTHER C2 DOMAIN-CONTAINING 1 154 - -
Gabi3980g00027 159 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 126 IPR035892 -
Gabi3980g00027 159 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Gabi3980g00027 159 SMART C2_3c 5 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3980g00027 Gabi-Chr3980 376885 379736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3980g00027 4 119 C2H2 Transcription Factor Family AT4G21160 28.448 5.07e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3980g00027 - - gmx:100500006 222.631