Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3980g00014 ATGAATATGATGCGACGGCTGAAGAGCATTGCTTCTGGAAGGACTTCCATTTCTTCAGATCCTGGAGGGGATTCTAGCACAAAAAGAGCTAAGTTTGATCAAGATGCTGAAGGGAAAGTCAGTGAAGAAAGAATTACTGTTGAGAGAGGCAGCAAAGATCAGGAGCAGCATGTGGATGCATCAAAAGAAACTACAGTTGGCACATCCAATGTATCTACTGCAACTAGAACTGAAAAGTCCGGTTATGATGAACTTCCGAAAGAACTACATGAAATGAAAATTAGAGAAGAGAAAAGCAAAAACACTAATGAAAAGGATATAGAAGCAACTACAGTGAGTGGTAATGGAGCAGAAACAGGTCACATTATTACAACTGCTATTGGTGGTAGAGATGGACAACCAAAGCAGACAATCTCATACATGGCTGAACGTGTGGTTGGTACTGGTTCTTTTGGCGTTGTTTTCCAGGCTAAGTGCCTTGAAACTGGTGAAGCAGTTGCCATAAAGAAGGTGCTGCAAGACAAGAGATACAAGAATAGGGAACTCCAGGTTATGCGGACAGTTGACCATCCTAACGTTGTTAAACTAAAGCACTGTTTCTTTTCAACTACCGATAAAGATGAGTTGTACCTTAACCTGGTTTTGGAGTATGTACCCGAAACTGTCTACAAAGTTTCAAAGAACTATATTAGGGCGCACCAACATATGCCTATCATTTATGTGCAACTGTATACATACCAGATATGCCGCGCATTGAATTATTTACATCAAGTGATTGGCGTCTGTCATCGTGACATCAAACCCCAGAACCTATTGGTTAATCCCCAGACACATCAGTTAAAGATATGCGATTTTGGCAGTGCAAAGATGTTGGTGCCTGGTGAACCCAACATATCATATATCTGCTCTCGATATTATAGAGCTCCAGAACTTATATTTGGGGCAACTGAATATACAACTGCGATTGATATGTGGTCTGCTGGGTGTGTTTTGGCTGAGTTCCTTCTAGGACAGCCATTGTTTCCTGGAGAGAGTGGGGTTGATCAGTTAGTGGAGATCATTAAGGTCTTGGGAACGCCAACTAGAGAAGAAATAAAGTGTATGAATCCAAACTACAATGAATTTAAGTTTCCTCAGATTAAAGCACACCCGTGGCACAAGGTTTTTCACAAGAGAATGCCACCTGAAGCAGTGGATCTTGTGTCTAGGCTGCTTCAGTATTCACCAAATCTACGTTGCACTGCTTTGGCTGCATGTGCACACCCTTTCTTTGATGGTCTGCGGGACCCAAAGGCATGCTTGCCAAATGGGCAACAACTACCTCTTTTGTTCAATTTCACAGCTCAAGAACTGGCAAATGCACCTGATGAGTTGTGTCAACGTCTCATTCCCGAGCATGCAAGGACCAAGGTGTTAAATTGA 1422 0.4233 MNMMRRLKSIASGRTSISSDPGGDSSTKRAKFDQDAEGKVSEERITVERGSKDQEQHVDASKETTVGTSNVSTATRTEKSGYDELPKELHEMKIREEKSKNTNEKDIEATTVSGNGAETGHIITTAIGGRDGQPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQVMRTVDHPNVVKLKHCFFSTTDKDELYLNLVLEYVPETVYKVSKNYIRAHQHMPIIYVQLYTYQICRALNYLHQVIGVCHRDIKPQNLLVNPQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSAGCVLAEFLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYNEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCTALAACAHPFFDGLRDPKACLPNGQQLPLLFNFTAQELANAPDELCQRLIPEHARTKVLN 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3980g00014 473 Pfam Protein kinase domain 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3980g00014 473 Gene3D Phosphorylase Kinase; domain 1 125 219 - -
Gabi3980g00014 473 SUPERFAMILY Protein kinase-like (PK-like) 139 450 IPR011009 -
Gabi3980g00014 473 MobiDBLite consensus disorder prediction 1 78 - -
Gabi3980g00014 473 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 100 469 - -
Gabi3980g00014 473 ProSiteProfiles Protein kinase domain profile. 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3980g00014 473 MobiDBLite consensus disorder prediction 9 25 - -
Gabi3980g00014 473 CDD STKc_GSK3 135 427 IPR039192 -
Gabi3980g00014 473 FunFam Glycogen synthase kinase-3 beta 124 219 - -
Gabi3980g00014 473 ProSitePatterns Protein kinases ATP-binding region signature. 146 170 IPR017441 GO:0005524
Gabi3980g00014 473 FunFam Shaggy-related protein kinase kappa 220 468 - -
Gabi3980g00014 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Gabi3980g00014 473 Gene3D Transferase(Phosphotransferase) domain 1 220 468 - -
Gabi3980g00014 473 SMART serkin_6 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3980g00014 473 MobiDBLite consensus disorder prediction 26 60 - -
Gabi3980g00014 473 MobiDBLite consensus disorder prediction 61 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3980g00014 Gabi-Chr3980 222651 227505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3980g00014 146 427 Core Cell Cycle Gene Families AT1G76540 34.828 1.40e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gabi3980g00014 Pkinase 2.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3980g00014 K27414 - gmx:100811346 852.432