Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3980g00013 ATGAGTTTTGGGGGTTTTTCAAACAGCAACTCAGGTAGTGGAGGTGCTAGAAACATAGCAGATATTCCTTACAACAACGGTACCACTACCAACCACAACAACAACAACAACGATAGAATGCCCTTTGGAACAATCTCACAGCCACGCCTAGTGACTACTCCCACTTTGGCTAAATCCATGTTCAACTCTTCTGGGTTGTCTCTTGCACTTCAAACAAATATAGATGGACATGAAGATGTGAATAGAATGCCCGAGAATTTTGAGCCAAATGGTTTGAGAAGGAGCAGAGAAGAAGAACATGAAAGCAGATCTGGCAGTGATAACATGGATGGTGGTTCTGGTGATGAACAAGATGCTGCCGACAACCCTCCAAGGAAGAAGCGTTATCACCGACACACTCCTCAACAGATACAAGAGCTTGAATCGTTGTTTAAGGAGTGTCCTCACCCAGATGAGAAACAAAGACTGGAACTTAGCAAAAGGCTTTGCTTGGAAACGAGGCAAGTGAAGTTTTGGTTCCAAAATCGTAGAACCCAAATGAAGACCCAATTGGAGCGCCATGAGAACACGTTGCTTAGGCAAGAGAATGATAAGCTTAGAGCTGAGAACATGTCTATTAGGGACGCTATGAGGAATCCTATGTGTTCAAATTGTGGGGGTCCAGCTATTATTGGTGAGATTTCACTTGAGGAACAGCATCTTCGGATTGAGAATGCTCGGTTGAAGGATGAGCTAGACCGAGTTTGTGCACTTGCGGGCAAGTTTTTGGGTCGCCCCATTTCTTCATTGACAAACTCAATCACTCCTCCATTGCCAAATTCAAGTTTGGAGCTTGGTGTTGGGGGCAATGGTTTTGGAGGGATGAACATGGAGAGGTCTATGTTTCTTGAGCTTGCTTTGGCTGCAATGGATGAGTTGGTTAAGATGGCACAAACTGGTGAGCCTCTGTGGATTAGGAGTATTGAAGGGGGAAGGGAAATTATGAACCATGAGGAATACATGAGGACATTCACTCCTTGCATTGGTTTGAGACCTAATGGTTTTGTTTCTGAGGCCTCTAGAGAAACTGGAATGGTCATCATAAACAGCCTGGCTCTTGTTGAAACTCTTATGGACCCGAATCGATGGGCAGAGATGTTTCCTTGTATGATTGCAAGAACCTCCACAACTGAAGTGATATCTAATGGAATAAACGGAACCAGAAATGGTGCACTTCAACTAATGCATGCTGAACTTCAAGTTCTTTCACCTTTGGTTCCGGTTCGTGAGGTCAATTTCTTACGCTTTTGCAAGCAGCATGCAGAAGGGGTGTGGGCTGTGGTAGATGTGTCCATAGATACTATCAGAGAAACTTCAGGGGCATCGAGTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGTTTGGTGCAAGATATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAACATGCTGAATACGATGAAAGCCAAGTCCACCAGCTCTATAGACCCTTGTTGAGCTCAGGCATTGGCTTCGGTGCCCTACGCTGGGTCGCTACCCTACAACGCCAATGCGAGTGCCTTGCCATCTTAATGTCCTCCGCAGCACCCTCTCGTGACCATTCTGCAATAACGGCGGGTGGAAGGCGAAGCATGTTGAAGCTGGCACAACGTATGACGAACAACTTTTGTGCAGGGGTTTGTGCATCGACGGTGCACAAATGGAACAAGCTGAACGCCGGGAACGTGGAGGAAGATGTGAGGGTGATGACCCGGAAGAGCGTGGACGATCCCGGTGAGCCACCGGGGATTGTGCTGAGCGCCGCCACGTCGGTGTGGCTCCCAGTTTCACCCCAAAGACTCTTTGATTTCCTACGTGACGAGAGGCTCCGAAGCGAGTGGGACATACTCTCCAACGGTGGTCCCATGCAAGAGATGGCCCACATTGCTAAGGGACAAGACCATGGGAACTGCGTCTCTCTCCTGCGAGCCAGTGCGATCAATTCGAACCAGAGTAGCATGTTGATACTGCAGGAGACATGCATAGACGCGGCGGGGTCGCTTGTGGTGTACGCGCCGGTGGATATTCCTGCCATGCACGTGGTCATGAACGGTGGTGATTCGGCTTACGTGGCGTTGTTGCCGTCAGGGTTTGCTATTGTTCCTGATGGGCCTGGGTCACGTGGTGGGTCCCTTCTGACGGTGGCGTTTCAGATACTTGTGAATAGTCTCCCAACGGCCAAGCTCACGGTGGAGTCAGTGGAGACGGTGAACAACCTCATCTCCTGCACGGTTCAGAAGATCAAAGCCGCTCTTCAATGTGAGAGCTGA 2313 0.4881 MSFGGFSNSNSGSGGARNIADIPYNNGTTTNHNNNNNDRMPFGTISQPRLVTTPTLAKSMFNSSGLSLALQTNIDGHEDVNRMPENFEPNGLRRSREEEHESRSGSDNMDGGSGDEQDAADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLTNSITPPLPNSSLELGVGGNGFGGMNMERSMFLELALAAMDELVKMAQTGEPLWIRSIEGGREIMNHEEYMRTFTPCIGLRPNGFVSEASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTSTTEVISNGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGASSFVNCRRLPSGCLVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSGIGFGALRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVEEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINSNQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3980g00013 770 Coils Coil 177 209 - -
Gabi3980g00013 770 ProSiteProfiles START domain profile. 288 524 IPR002913 GO:0008289
Gabi3980g00013 770 Pfam START domain 297 521 IPR002913 GO:0008289
Gabi3980g00013 770 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 122 767 IPR042160 -
Gabi3980g00013 770 SUPERFAMILY Homeodomain-like 109 183 IPR009057 -
Gabi3980g00013 770 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Gabi3980g00013 770 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Gabi3980g00013 770 SUPERFAMILY Bet v1-like 289 521 - -
Gabi3980g00013 770 MobiDBLite consensus disorder prediction 1 46 - -
Gabi3980g00013 770 FunFam Homeobox-leucine zipper protein GLABRA 2 297 520 - -
Gabi3980g00013 770 FunFam Homeobox-leucine zipper protein HDG1 113 199 - -
Gabi3980g00013 770 MobiDBLite consensus disorder prediction 78 106 - -
Gabi3980g00013 770 SMART HOX_1 124 187 IPR001356 GO:0003677
Gabi3980g00013 770 SMART START_1 297 521 IPR002913 GO:0008289
Gabi3980g00013 770 Pfam Homeodomain 126 181 IPR001356 GO:0003677
Gabi3980g00013 770 MobiDBLite consensus disorder prediction 77 133 - -
Gabi3980g00013 770 CDD homeodomain 125 183 IPR001356 GO:0003677
Gabi3980g00013 770 SUPERFAMILY Bet v1-like 549 763 - -
Gabi3980g00013 770 CDD START_ArGLABRA2_like 292 520 - -
Gabi3980g00013 770 Gene3D - 113 199 - -
Gabi3980g00013 770 Gene3D - 354 517 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3980g00013 Gabi-Chr3980 199027 205516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3980g00013 1 770 Homeobox Transcription Factor Family AT3G61150 64.904 0.0 1044
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3980g00013 START 2.1e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3980g00013 K09338 - gmx:100811873 1326.23