Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3980g00012 ATGAGTTTTGGGGGTTTTTCAAACAGCAACTCAGGTAGTGGAGGTGCTAGAAACATAGCAGATATTCCTTACAACAACGGTACCACTACCAACCACAACAACAACAACAACGATAGAATGCCCTTTGGAACAATCTCACAGCCACGCCTAGTGACTACTCCCACTTTGGCTAAATCCATGTTCAACTCTTCTGGGTTGTCTCTTGCACTTCAAACAAATATAGATGGACATGAAGATGTGAATAGAATGCCCGAGAATTTTGAGCCAAATGGTTTGAGAAGGAGCAGAGAAGAAGAACATGAAAGCAGATCTGGCAGTGATAACATGGATGGTGGTTCTGGTGATGAACAAGATGCTGCCGACAACCCTCCAAGGAAGAAGCGTTATCACCGACACACTCCTCAACAGATACAAGAGCTTGAATCGTTGTTTAAGGAGTGTCCTCACCCAGATGAGAAACAAAGACTGGAACTTAGCAAAAGGCTTTGCTTGGAAACGAGGCAAGTGAAGTTTTGGTTCCAAAATCGTAGAACCCAAATGAAGACCCAATTGGAGCGCCATGAGAACACGTTGCTTAGGCAAGAGAATGATAAGCTTAGAGCTGAGAACATGTCTATTAGGGACGCTATGAGGAATCCTATGTGTTCAAATTGTGGGGGTCCAGCTATTATTGGTGAGATTTCACTTGAGGAACAGCATCTTCGGATTGAGAATGCTCGGTTGAAGGATGAGCTAGACCGAGTTTGTGCACTTGCGGGCAAGTTTTTGGGTCGCCCCATTTCTTCATTGACAAACTCAATCACTCCTCCATTGCCAAATTCAAGTTTGGAGCTTGGTGTTGGGGGCAATGGTTTTGGAGGGATGAACAGTGTGTCTGCAACATTGCCTTTGGGGCCTGATTTTGGGGTGGGGATGTCTAACCATTTAGCCATGGTGTCTCCTCCAACTAGACCATCGGCCGCTACGGTGACCGGCTTTGATAGATCAGTGGAGAGGTCTATGTTTCTTGAGCTTGCTTTGGCTGCAATGGATGAGTTGGTTAAGATGGCACAAACTGGTGAGCCTCTGTGGATTAGGAGTATTGAAGGGGGAAGGGAAATTATGAACCATGAGGAATACATGAGGACATTCACTCCTTGCATTGGTTTGAGACCTAATGGTTTTGTTTCTGAGGCCTCTAGAGAAACTGGAATGGTCATCATAAACAGCCTGGCTCTTGTTGAAACTCTTATGGACCCGAATCGATGGGCAGAGATGTTTCCTTGTATGATTGCAAGAACCTCCACAACTGAAGTGATATCTAATGGAATAAACGGAACCAGAAATGGTGCACTTCAACTAATGCATGCTGAACTTCAAGTTCTTTCACCTTTGGTTCCGGTTCGTGAGGTCAATTTCTTACGCTTTTGCAAGCAGCATGCAGAAGGGGTGTGGGCTGTGGTAGATGTGTCCATAGATACTATCAGAGAAACTTCAGGGGCATCGAGTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGTTTGGTGCAAGATATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAACATGCTGAATACGATGAAAGCCAAGTCCACCAGCTCTATAGACCCTTGTTGAGCTCAGGCATTGGCTTCGGTGCCCTACGCTGGGTCGCTACCCTACAACGCCAATGCGAGTGCCTTGCCATCTTAATGTCCTCCGCAGCACCCTCTCGTGACCATTCTGCAATAACGGCGGGTGGAAGGCGAAGCATGTTGAAGCTGGCACAACGTATGACGAACAACTTTTGTGCAGGGGTTTGTGCATCGACGGTGCACAAATGGAACAAGCTGAACGCCGGGAACGTGGAGGAAGATGTGAGGGTGATGACCCGGAAGAGCGTGGACGATCCCGGTGAGCCACCGGGGATTGTGCTGAGCGCCGCCACGTCGGTGTGGCTCCCAGTTTCACCCCAAAGACTCTTTGATTTCCTACGTGACGAGAGGCTCCGAAGCGAGTGGGACATACTCTCCAACGGTGGTCCCATGCAAGAGATGGCCCACATTGCTAAGGGACAAGACCATGGGAACTGCGTCTCTCTCCTGCGAGCCAGTGCGATCAATTCGAACCAGAGTAGCATGTTGATACTGCAGGAGACATGCATAGACGCGGCGGGGTCGCTTGTGGTGTACGCGCCGGTGGATATTCCTGCCATGCACGTGGTCATGAACGGTGGTGATTCGGCTTACGTGGCGTTGTTGCCGTCAGGGTTTGCTATTGTTCCTGATGGGCCTGGGTCACGTGGGCCGCAGAATGGGGCAACCGCCAACGGCGGTGGTGGGGCGCGTGTGAGTGGGTCCCTTCTGACGGTGGCGTTTCAGATACTTGTGAATAGTCTCCCAACGGCCAAGCTCACGGTGGAGTCAGTGGAGACGGTGAACAACCTCATCTCCTGCACGGTTCAGAAGATCAAAGCCGCTCTTCAATGTGAGAGCTGA 2481 0.495 MSFGGFSNSNSGSGGARNIADIPYNNGTTTNHNNNNNDRMPFGTISQPRLVTTPTLAKSMFNSSGLSLALQTNIDGHEDVNRMPENFEPNGLRRSREEEHESRSGSDNMDGGSGDEQDAADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLTNSITPPLPNSSLELGVGGNGFGGMNSVSATLPLGPDFGVGMSNHLAMVSPPTRPSAATVTGFDRSVERSMFLELALAAMDELVKMAQTGEPLWIRSIEGGREIMNHEEYMRTFTPCIGLRPNGFVSEASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTSTTEVISNGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGASSFVNCRRLPSGCLVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSGIGFGALRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVEEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINSNQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGPQNGATANGGGGARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3980g00012 826 Coils Coil 177 209 - -
Gabi3980g00012 826 SUPERFAMILY Homeodomain-like 109 183 IPR009057 -
Gabi3980g00012 826 Gene3D - 394 557 IPR023393 -
Gabi3980g00012 826 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 122 823 IPR042160 -
Gabi3980g00012 826 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Gabi3980g00012 826 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Gabi3980g00012 826 ProSiteProfiles START domain profile. 328 564 IPR002913 GO:0008289
Gabi3980g00012 826 MobiDBLite consensus disorder prediction 1 46 - -
Gabi3980g00012 826 FunFam Homeobox-leucine zipper protein HDG1 113 199 - -
Gabi3980g00012 826 SUPERFAMILY Bet v1-like 330 561 - -
Gabi3980g00012 826 SMART START_1 337 561 IPR002913 GO:0008289
Gabi3980g00012 826 Pfam START domain 337 561 IPR002913 GO:0008289
Gabi3980g00012 826 SUPERFAMILY Bet v1-like 589 819 - -
Gabi3980g00012 826 Gene3D - 113 199 - -
Gabi3980g00012 826 MobiDBLite consensus disorder prediction 78 106 - -
Gabi3980g00012 826 SMART HOX_1 124 187 IPR001356 GO:0003677
Gabi3980g00012 826 Pfam Homeodomain 126 181 IPR001356 GO:0003677
Gabi3980g00012 826 MobiDBLite consensus disorder prediction 77 133 - -
Gabi3980g00012 826 FunFam Homeobox-leucine zipper protein GLABRA 2 337 560 - -
Gabi3980g00012 826 CDD homeodomain 125 183 IPR001356 GO:0003677
Gabi3980g00012 826 CDD START_ArGLABRA2_like 332 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3980g00012 Gabi-Chr3980 199027 205516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3980g00012 1 826 Homeobox Transcription Factor Family AT3G61150 65.718 0.0 1059
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3980g00012 START 2.4e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3980g00012 K09338 - gmx:100811873 1394.79