Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3980g00010 ATGAGTTTTGGGGGTTTTTCAAACAGCAACTCAGGTAGTGGAGGTGCTAGAAACATAGCAGATATTCCTTACAACAACGGTACCACTACCAACCACAACAACAACAACAACGATAGAATGCCCTTTGGAACAATCTCACAGCCACGCCTAGTGACTACTCCCACTTTGGCTAAATCCATGTTCAACTCTTCTGGGTTGTCTCTTGCACTTCAGCAAACAAATATAGATGGACATGAAGATGTGAATAGAATGCCCGAGAATTTTGAGCCAAATGGTTTGAGAAGGAGCAGAGAAGAAGAACATGAAAGCAGATCTGGCAGTGATAACATGGATGGTGGTTCTGGTGATGAACAAGATGCTGCCGACAACCCTCCAAGGAAGAAGCGTTATCACCGACACACTCCTCAACAGATACAAGAGCTTGAATCGTTGTTTAAGGAGTGTCCTCACCCAGATGAGAAACAAAGACTGGAACTTAGCAAAAGGCTTTGCTTGGAAACGAGGCAAGTGAAGTTTTGGTTCCAAAATCGTAGAACCCAAATGAAGACCCAATTGGAGCGCCATGAGAACACGTTGCTTAGGCAAGAGAATGATAAGCTTAGAGCTGAGAACATGTCTATTAGGGACGCTATGAGGAATCCTATGTGTTCAAATTGTGGGGGTCCAGCTATTATTGGTGAGATTTCACTTGAGGAACAGCATCTTCGGATTGAGAATGCTCGGTTGAAGGATGAGCTAGACCGAGTTTGTGCACTTGCGGGCAAGTTTTTGGGTCGCCCCATTTCTTCATTGACAAACTCAATCACTCCTCCATTGCCAAATTCAAGTTTGGAGCTTGGTGTTGGGGGCAATGGTTTTGGAGGGATGAACAGTGTGTCTGCAACATTGCCTTTGGGGCCTGATTTTGGGGTGGGGATGTCTAACCATTTAGCCATGGTGTCTCCTCCAACTAGACCATCGGCCGCTACGGTGACCGGCTTTGATAGATCAGTGGAGAGGTCTATGTTTCTTGAGCTTGCTTTGGCTGCAATGGATGAGTTGGTTAAGATGGCACAAACTGGTGAGCCTCTGTGGATTAGGAGTATTGAAGGGGGAAGGGAAATTATGAACCATGAGGAATACATGAGGACATTCACTCCTTGCATTGGTTTGAGACCTAATGGTTTTGTTTCTGAGGCCTCTAGAGAAACTGGAATGGTCATCATAAACAGCCTGGCTCTTGTTGAAACTCTTATGGACCCGAATCGATGGGCAGAGATGTTTCCTTGTATGATTGCAAGAACCTCCACAACTGAAGTGATATCTAATGGAATAAACGGAACCAGAAATGGTGCACTTCAACTAATGCATGCTGAACTTCAAGTTCTTTCACCTTTGGTTCCGGTTCGTGAGGTCAATTTCTTACGCTTTTGCAAGCAGCATGCAGAAGGGGTGTGGGCTGTGGTAGATGTGTCCATAGATACTATCAGAGAAACTTCAGGGGCATCGAGTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGTTTGGTGCAAGATATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAACATGCTGAATACGATGAAAGCCAAGTCCACCAGCTCTATAGACCCTTGTTGAGCTCAGGCATTGGCTTCGGTGCCCTACGCTGGGTCGCTACCCTACAACGCCAATGCGAGTGCCTTGCCATCTTAATGTCCTCCGCAGCACCCTCTCGTGACCATTCTGCAATAACGGCGGGTGGAAGGCGAAGCATGTTGAAGCTGGCACAACGTATGACGAACAACTTTTGTGCAGGGGTTTGTGCATCGACGGTGCACAAATGGAACAAGCTGAACGCCGGGAACGTGGAGGAAGATGTGAGGGTGATGACCCGGAAGAGCGTGGACGATCCCGGTGAGCCACCGGGGATTGTGCTGAGCGCCGCCACGTCGGTGTGGCTCCCAGTTTCACCCCAAAGACTCTTTGATTTCCTACGTGACGAGAGGCTCCGAAGCGAGTGGGACATACTCTCCAACGGTGGTCCCATGCAAGAGATGGCCCACATTGCTAAGGGACAAGACCATGGGAACTGCGTCTCTCTCCTGCGAGCCAGTGCGATCAATTCGAACCAGAGTAGCATGTTGATACTGCAGGAGACATGCATAGACGCGGCGGGGTCGCTTGTGGTGTACGCGCCGGTGGATATTCCTGCCATGCACGTGGTCATGAACGGTGGTGATTCGGCTTACGTGGCGTTGTTGCCGTCAGGGTTTGCTATTGTTCCTGATGGGCCTGGGTCACGTGGGCCGCAGAATGGGGCAACCGCCAACGGCGGTGGTGGGGCGCGTGTGAGTGGGTCCCTTCTGACGGTGGCGTTTCAGATACTTGTGAATAGTCTCCCAACGGCCAAGCTCACGGTGGAGTCAGTGGAGACGGTGAACAACCTCATCTCCTGCACGGTTCAGAAGATCAAAGCCGCTCTTCAATGTGAGAGCTGA 2484 0.4952 MSFGGFSNSNSGSGGARNIADIPYNNGTTTNHNNNNNDRMPFGTISQPRLVTTPTLAKSMFNSSGLSLALQQTNIDGHEDVNRMPENFEPNGLRRSREEEHESRSGSDNMDGGSGDEQDAADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLTNSITPPLPNSSLELGVGGNGFGGMNSVSATLPLGPDFGVGMSNHLAMVSPPTRPSAATVTGFDRSVERSMFLELALAAMDELVKMAQTGEPLWIRSIEGGREIMNHEEYMRTFTPCIGLRPNGFVSEASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTSTTEVISNGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGASSFVNCRRLPSGCLVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSGIGFGALRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVEEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINSNQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGPQNGATANGGGGARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3980g00010 827 SUPERFAMILY Bet v1-like 590 820 - -
Gabi3980g00010 827 Gene3D - 395 558 IPR023393 -
Gabi3980g00010 827 Gene3D - 114 200 - -
Gabi3980g00010 827 Pfam Homeodomain 127 182 IPR001356 GO:0003677
Gabi3980g00010 827 Coils Coil 178 210 - -
Gabi3980g00010 827 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 123 824 IPR042160 -
Gabi3980g00010 827 Pfam START domain 338 562 IPR002913 GO:0008289
Gabi3980g00010 827 MobiDBLite consensus disorder prediction 1 46 - -
Gabi3980g00010 827 FunFam Homeobox-leucine zipper protein HDG1 114 200 - -
Gabi3980g00010 827 SUPERFAMILY Bet v1-like 331 562 - -
Gabi3980g00010 827 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
Gabi3980g00010 827 ProSiteProfiles START domain profile. 329 565 IPR002913 GO:0008289
Gabi3980g00010 827 FunFam Homeobox-leucine zipper protein GLABRA 2 338 561 - -
Gabi3980g00010 827 CDD homeodomain 126 184 IPR001356 GO:0003677
Gabi3980g00010 827 SUPERFAMILY Homeodomain-like 110 184 IPR009057 -
Gabi3980g00010 827 CDD START_ArGLABRA2_like 333 561 - -
Gabi3980g00010 827 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
Gabi3980g00010 827 SMART HOX_1 125 188 IPR001356 GO:0003677
Gabi3980g00010 827 SMART START_1 338 562 IPR002913 GO:0008289
Gabi3980g00010 827 MobiDBLite consensus disorder prediction 76 134 - -
Gabi3980g00010 827 MobiDBLite consensus disorder prediction 79 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3980g00010 Gabi-Chr3980 199027 205516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3980g00010 1 827 Homeobox Transcription Factor Family AT3G61150 65.403 0.0 1055
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3980g00010 START 2.4e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3980g00010 K09338 - gmx:100811873 1401.34