Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3979g00002 ATGGTAGAAACAAATATTGATGAATGTAAGACATCAAATAATACATGCCTAAGTGAAAATAATTGTCACAACACCGATGGGTCTTACAAATGTTTCTGTCCTAAGGGGCAATCCGGAGATGGAACAAAGAACGGAGGGTGCCACCGACGAGATATAGTTACCCAGGTTGTCATTGGAACAGGTGCAGGATTCATACTTCTAATTGTGGGAATTTCCTCGCTGTACTTAATATACGAGAAAAGGAAACTCGTCAAACTGAAGGAGAAGTTCTTTAAGCAAAATGGGGGTATCATTTTGCAACAGCGACTCTCTGCAGGAGAAAACACTTCTCAATCTACTACAGTGTTCTCAGCAGAGGAACTTAAGAAGGCCACCAACAATTATGATGAGAGCATAATCATCGGCAGAGGAGGTTATGGTACAGTTTACAAAGGAGTTTTGTCAGATAAGAGGATTGTTGCCATCAAGAAGTCCAAAATTGTGGATCAGAGCCAAATTGAACAATTCATAAACGAGGTGATTGTGCTATCACAAATTAATCATAGGAATGTGGTCAAACTCTTGGGTTGTTGTTTAGAGACAGAAGTTCCTTCACTGGTTTATGAATTTGTTAACAATGGTACCCTTTTTGATTATATACACAAAGAAGGCAAGGCAGGTAATGTACCTTGGAAAACACGTCTAAGGATAGCAGCAGAGGCTGCAGGGGCTCTATCATATCTGCACTCAGCTGCTTCTATACCCATTATACATAGAGATGTAAAGACTGCCAACATTCTCTTGGATGAAACTTACACTACTAAAGTGTCTGATTTTGGAGCTTCAAGATTGGTTCCTCTTGATCAAACTGAATTAGCCACATTGGTGCAAGGAACTATTGGTTATTTGGACCCAGAGTACATGCAAACAAGCCAACTTACTCAGAAAAGTGATGTGTATAGCTTCGGAGTAGTTCTTGTAGAGCTTCTTACAGGGGAGAAACCTCTTTGTTTTGACAGGTCAGAAGAGAAAAGAAGTCTTGCCATGCACTTTTTATCTTGCTTGAGAGAGGATCGCATGTTTGAGGTTCTTCAAGTTGGAATTTTGAATGTAGAAAATAAGGAAAAGATCAAGGAGGTTGCTATTCTTGCAACAAAGTGCTTGAGACTAAGAGGGGAGGAGAGGCCTAGCATGAAAGAAGTGGCAATGGAGTTGGAGGGAATAAGGCTAATGGAAAAGCATCCATGGATCAACACAGACGTGAATCTAGAGGAGACTCATTACTTGCTTCATGAGGCATCATCTAGCATTCATGAACATGGTGATAGCAGCAGCCATCAAAATACTGGGTATGACGGCATCAAGGATCATGTACTCATTGACTTCGATGACCGAAGATGA 1380 0.4072 MVETNIDECKTSNNTCLSENNCHNTDGSYKCFCPKGQSGDGTKNGGCHRRDIVTQVVIGTGAGFILLIVGISSLYLIYEKRKLVKLKEKFFKQNGGIILQQRLSAGENTSQSTTVFSAEELKKATNNYDESIIIGRGGYGTVYKGVLSDKRIVAIKKSKIVDQSQIEQFINEVIVLSQINHRNVVKLLGCCLETEVPSLVYEFVNNGTLFDYIHKEGKAGNVPWKTRLRIAAEAAGALSYLHSAASIPIIHRDVKTANILLDETYTTKVSDFGASRLVPLDQTELATLVQGTIGYLDPEYMQTSQLTQKSDVYSFGVVLVELLTGEKPLCFDRSEEKRSLAMHFLSCLREDRMFEVLQVGILNVENKEKIKEVAILATKCLRLRGEERPSMKEVAMELEGIRLMEKHPWINTDVNLEETHYLLHEASSSIHEHGDSSSHQNTGYDGIKDHVLIDFDDRR 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3979g00002 459 ProSitePatterns Protein kinases ATP-binding region signature. 134 157 IPR017441 GO:0005524
Gabi3979g00002 459 SUPERFAMILY Protein kinase-like (PK-like) 109 399 IPR011009 -
Gabi3979g00002 459 FunFam Wall-associated receptor kinase 2 204 421 - -
Gabi3979g00002 459 SUPERFAMILY EGF/Laminin 5 40 - -
Gabi3979g00002 459 Pfam Protein kinase domain 130 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3979g00002 459 Gene3D Phosphorylase Kinase; domain 1 94 203 - -
Gabi3979g00002 459 CDD STKc_IRAK 134 401 - -
Gabi3979g00002 459 Gene3D Laminin 3 44 - -
Gabi3979g00002 459 CDD EGF_CA 5 40 - -
Gabi3979g00002 459 ProSitePatterns Calcium-binding EGF-like domain signature. 5 31 IPR018097 GO:0005509
Gabi3979g00002 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Gabi3979g00002 459 Gene3D Transferase(Phosphotransferase) domain 1 204 419 - -
Gabi3979g00002 459 SMART egfca_6 5 48 IPR001881 GO:0005509
Gabi3979g00002 459 ProSiteProfiles EGF-like domain profile. 5 43 IPR000742 -
Gabi3979g00002 459 FunFam Fibrillin 2 2 45 - -
Gabi3979g00002 459 Pfam Calcium-binding EGF domain 6 43 IPR001881 GO:0005509
Gabi3979g00002 459 ProSiteProfiles Protein kinase domain profile. 128 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3979g00002 459 SMART serkin_6 128 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3979g00002 459 FunFam Wall-associated receptor kinase 2 98 203 - -
Gabi3979g00002 459 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 22 33 IPR000152 -
Gabi3979g00002 459 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 10 411 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3979g00002 Gabi-Chr3979 13568 16528 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3979g00002 5 459 Receptor kinase-like Gene Family AT1G21230 51.188 3.89e-155 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi3979g00002 Pkinase 6.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3979g00002 - - gsj:114381577 713.761