Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3976g00062 ATGGCGCAAATTTTGCTTCATGGGACTCTCCACGCCACCATCTACGAGGTTGATAAGCTCAACGCTGGTGGTGGTGGGAATTTTTTCAGCATGGAGACAGTTGGTCTTGGAAAGGGAGTTACTAAACTTTATGCAACCATTGATCTGGAGAAGGCAAGAGTGGGAAGGACCAGAATGATAGAAAATGAACGTACTAATCCCAAATGGTATGAGTCTTTTCACATTTATTGTGCCCATATGGCTTCAAATGTTGTATTCACTGTGAAAGATGATAATCCTATTGGAGCAACTTTGATTGGAAGAGCATATGTGCCCGTTGAGGAGCTCTTGGATGGTGAAGAAATAGATAAATGGGTTGAAATCTTGGATAAGGATAAAAATCCAATACATGAGGGTTCAAAGATCCATGTGAAGCTGCAATATTTTGATATCACAAAAGATCGCAACTTTGCTCGAGGCATTAGAAGTCCTAAATTTCCTGGAGTTCCCTATACTTTCTTCTCACAAAGGCAAGGATGCAGGGTATCTCTGTACCAAGATGCTCATGTGCCAGATAATTTTGTCCCTAAAATACCACTTGCTGGAGGCAAGAATTATGAGCCTCATAGGTGTTGGGAGGATATTTTTGATGCAATCACTAAAGCAAAACACTTAATATACATTACTGGTTGGTCTGTTTATACTGAAATTTCCTTGGTAAGGGATTCTAGGAGGCCAAAGGCTGGGGGAGACACAACACTTGGTGAGCTTCTCAAGAAAAAGGCAATTGAAGGTGTAAGGGTTTTGATGCTTGTTTGGGATGATAGAACATCAGTTGGTTTGTTGAAAAAAGATGGATTGATGGCTACTCATGATGAAGAAACTGCCCAGTTCTTCAATGACACTGAAGTGCACTGTGTTTTATGCCCCCGTAATCCTGATGATGGAGGTAGCATTGTTCAAGATTTACAAATTTCTACCATGTTTACTCATCACCAGAAGATTGTGGTGGTTGACAGTGAGTTGCCAAATGGAGGGTCAGATAGGCGAAGACTTGTGAGTTTTGTTGGGGGCATTGATCTTTGTGATGGAAGATATGATACAGCCTTTCACTCACTTTTCAGAACCCTTGACACAGCACACCATGATGATTTTCATCAACCTAACTTTCCTGGTGCTGCAATCACAAAAGGTGGTCCCAGGGAACCTTGGCATGACATTCACTCCCGGCTTGAAGGACCAATAGCATGGGATGTTTTGTTTAACTTTGAGCAGAGATGGAGGAAGCAAGGTGGAAAGGATTTACTTGTTCCACTGAGAGAGCTTGAAGATGCCATTATCCCTCCATCTCCAGTAATGTTTCCTGATGATCATGAGACATGGAATGTTCAGTTATTTAGATCTATTGATGGTGGGGCTGCTTTTGGTTTCCCAGAGACTCCTGAAGATGCTGCCAGAGCTGGGCTTGTTAGTGGGAAGGATAATATCATTGATCGAAGCATTCAAGATGCGTATATTAATGCTATTCGACGTGCAAAGAATTTCATCTATATTGAAAATCAGTATTTCCTTGGAAGCTCTTTTGCCTGGAGTGCTGAGGATATTAAGCCCGAAGATATTGGTGCTTTGCATGTAATCCCAAGGGAACTTTCACTTAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTCACGGTGTATGTTGTGGTTCCAATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAGAAGAGAACAATGGAGATGATGTACAAGGACATTATTCAGGCACTGAGGGCTAAGGGAATTGAGGATGATCCTCGGAACTATTTGACATTCTTCTGCCTAGGTAATAGGGAAGTGAAGAAACAAGGAGAGTATGAGCCTACTGAACAACCAGAACCTGATTCAGATTATAAGAGAGCCCAAGAAGCTCGGCGTTTCATGATTTATGTTCATACCAAGATGATGATAGTTGATGACGAATACATAATCATTGGATCTGCCAACATCAACCAGAGATCAATGGATGGTGCCAGGGATTCTGAGATTGCAATGGGTGCTTATCAGCCCTATCATTTGGCTACCAGGCAACCTGCAAGGGGTCAGATTCATGGTTTCCGCATGTCATTGTGGTATGAACACCTTGGCATGCTTCATGACTCCTTCTTCCAGCCAGAAAGTGAAGAATGTGTTAATAAGGTGAACCAGATTGCTGACAAGTATTGGGATCTCTATTCTAATGAGTCACTTGAGCATGACCTTCCTGGACACCTGCTCCGCTATCCTATCGGGGTTTCCGGGGAAGGAGATGTCACAGAGCTGCCAGGATTTGAATTCTTCCCTGACACCAAGGCTCGTGTTCTTGGTGGCAAAGCTGACTACCTCCCCCCTATCCTTACTACTTAG 2409 0.4305 MAQILLHGTLHATIYEVDKLNAGGGGNFFSMETVGLGKGVTKLYATIDLEKARVGRTRMIENERTNPKWYESFHIYCAHMASNVVFTVKDDNPIGATLIGRAYVPVEELLDGEEIDKWVEILDKDKNPIHEGSKIHVKLQYFDITKDRNFARGIRSPKFPGVPYTFFSQRQGCRVSLYQDAHVPDNFVPKIPLAGGKNYEPHRCWEDIFDAITKAKHLIYITGWSVYTEISLVRDSRRPKAGGDTTLGELLKKKAIEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETAQFFNDTEVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSELPNGGSDRRRLVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVPLRELEDAIIPPSPVMFPDDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFAWSAEDIKPEDIGALHVIPRELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQKRTMEMMYKDIIQALRAKGIEDDPRNYLTFFCLGNREVKKQGEYEPTEQPEPDSDYKRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLATRQPARGQIHGFRMSLWYEHLGMLHDSFFQPESEECVNKVNQIADKYWDLYSNESLEHDLPGHLLRYPIGVSGEGDVTELPGFEFFPDTKARVLGGKADYLPPILTT 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3976g00062 802 Gene3D Endonuclease Chain A 474 694 - -
Gabi3976g00062 802 Pfam Phospholipase D Active site motif 649 675 IPR001736 GO:0003824
Gabi3976g00062 802 Pfam Phospholipase D Active site motif 320 358 IPR001736 GO:0003824
Gabi3976g00062 802 Pfam Phospholipase D C terminal 721 791 IPR024632 -
Gabi3976g00062 802 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 320 358 IPR001736 GO:0003824
Gabi3976g00062 802 SMART C2_3c 9 118 IPR000008 -
Gabi3976g00062 802 ProSiteProfiles C2 domain profile. 1 119 IPR000008 -
Gabi3976g00062 802 Pfam C2 domain 8 121 IPR000008 -
Gabi3976g00062 802 SMART pld_4 648 675 IPR001736 GO:0003824
Gabi3976g00062 802 SMART pld_4 320 358 IPR001736 GO:0003824
Gabi3976g00062 802 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 143 IPR035892 -
Gabi3976g00062 802 SUPERFAMILY Phospholipase D/nuclease 145 440 - -
Gabi3976g00062 802 CDD C2_plant_PLD 2 142 - -
Gabi3976g00062 802 FunFam Phospholipase D 461 694 - -
Gabi3976g00062 802 CDD PLDc_pPLDalpha_2 486 695 - -
Gabi3976g00062 802 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 648 675 IPR001736 GO:0003824
Gabi3976g00062 802 PIRSF PLD_plant 1 802 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gabi3976g00062 802 PANTHER PHOSPHOLIPASE D 4 790 IPR015679 -
Gabi3976g00062 802 FunFam Phospholipase D delta 195 438 - -
Gabi3976g00062 802 Gene3D Endonuclease Chain A 194 436 - -
Gabi3976g00062 802 SUPERFAMILY Phospholipase D/nuclease 445 732 - -
Gabi3976g00062 802 Gene3D C2 domain 6 153 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3976g00062 Gabi-Chr3976 589820 593742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3976g00062 1 802 Phospholipase D Gene Family (Wang group) AT3G15730 81.605 0.0 1407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3976g00062 K01115 - gmx:100786410 1559.27