Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3976g00061 ATGGCGCAAATTTTGCTTCATGGGACTCTCCACGCCACCATCTACGAGGTTGATAAGCTCAACGCTGGTGGTGGTGGGAATTTTTTCAGCATGACAGTTGGTCTTGGAAAGGGAGTTACTAAACTTTATGCAACCATTGATCTGGAGAAGGCAAGAGTGGGAAGGACCAGAATGATAGAAAATGAACGTACTAATCCCAAATGGTATGAGTCTTTTCACATTTATTGTGCCCATATGGCTTCAAATGTTGTATTCACTGTGAAAGATGATAATCCTATTGGAGCAACTTTGATTGGAAGAGCATATGTGCCCGTTGAGGAGCTCTTGGATGGTGAAGAAATAGATAAATGGGTTGAAATCTTGGATAAGGATAAAAATCCAATACATGAGGGTTCAAAGATCCATGTGAAGCTGCAATATTTTGATATCACAAAAGATCGCAACTTTGCTCGAGGCATTAGAAGTCCTAAATTTCCTGGAGTTCCCTATACTTTCTTCTCACAAAGGCAAGGATGCAGGGTATCTCTGTACCAAGATGCTCATGTGCCAGATAATTTTGTCCCTAAAATACCACTTGCTGGAGGCAAGAATTATGAGCCTCATAGGTGTTGGGAGGATATTTTTGATGCAATCACTAAAGCAAAACACTTAATATACATTACTGGTTGGTCTGTTTATACTGAAATTTCCTTGGTAAGGGATTCTAGGAGGCCAAAGGCTGGGGGAGACACAACACTTGGTGAGCTTCTCAAGAAAAAGGCAATTGAAGGTGTAAGGGTTTTGATGCTTGTTTGGGATGATAGAACATCAGTTGGTTTGTTGAAAAAAGATGGATTGATGGCTACTCATGATGAAGAAACTGCCCAGTTCTTCAATGACACTGAAGTGCACTGTGTTTTATGCCCCCGTAATCCTGATGATGGAGGTAGCATTGTTCAAGATTTACAAATTTCTACCATGTTTACTCATCACCAGAAGATTGTGGTGGTTGACAGTGAGTTGCCAAATGGAGGGTCAGATAGGCGAAGACTTGTGAGTTTTGTTGGGGGCATTGATCTTTGTGATGGAAGATATGATACAGCCTTTCACTCACTTTTCAGAACCCTTGACACAGCACACCATGATGATTTTCATCAACCTAACTTTCCTGGTGCTGCAATCACAAAAGGTGGTCCCAGGGAACCTTGGCATGACATTCACTCCCGGCTTGAAGGACCAATAGCATGGGATGTTTTGTTTAACTTTGAGCAGAGATGGAGGAAGCAAGGTGGAAAGGATTTACTTGTTCCACTGAGAGAGCTTGAAGATGCCATTATCCCTCCATCTCCAGTAATGTTTCCTGATGATCATGAGACATGGAATGTTCAGTTATTTAGATCTATTGATGGTGGGGCTGCTTTTGGTTTCCCAGAGACTCCTGAAGATGCTGCCAGAGCTGGGCTTGTTAGTGGGAAGGATAATATCATTGATCGAAGCATTCAAGATGCGTATATTAATGCTATTCGACGTGCAAAGAATTTCATCTATATTGAAAATCAGTATTTCCTTGGAAGCTCTTTTGCCTGGAGTGCTGAGGATATTAAGCCCGAAGATATTGGTGCTTTGCATGTAATCCCAAGGGAACTTTCACTTAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTCACGGTGTATGTTGTGGTTCCAATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAGAAGAGAACAATGGAGATGATGTACAAGGACATTATTCAGGCACTGAGGGCTAAGGGAATTGAGGATGATCCTCGGAACTATTTGACATTCTTCTGCCTAGGTAATAGGGAAGTGAAGAAACAAGGAGAGTATGAGCCTACTGAACAACCAGAACCTGATTCAGATTATAAGAGAGCCCAAGAAGCTCGGCGTTTCATGATTTATGTTCATACCAAGATGATGATAGTTGATGACGAATACATAATCATTGGATCTGCCAACATCAACCAGAGATCAATGGATGGTGCCAGGGATTCTGAGATTGCAATGGGTGCTTATCAGCCCTATCATTTGGCTACCAGGCAACCTGCAAGGGGTCAGATTCATGGTTTCCGCATGTCATTGTGGTATGAACACCTTGGCATGCTTCATGACTCCTTCTTCCAGCCAGAAAGTGAAGAATGTGTTAATAAGGTGAACCAGATTGCTGACAAGTATTGGGATCTCTATTCTAATGAGTCACTTGAGCATGACCTTCCTGGACACCTGCTCCGCTATCCTATCGGGGTTTCCGGGGAAGGAGATGTCACAGAGCTGCCAGGATTTGAATTCTTCCCTGACACCAAGGCTCGTGTTCTTGGTGGCAAAGCTGACTACCTCCCCCCTATCCTTACTACTTAG 2406 0.4302 MAQILLHGTLHATIYEVDKLNAGGGGNFFSMTVGLGKGVTKLYATIDLEKARVGRTRMIENERTNPKWYESFHIYCAHMASNVVFTVKDDNPIGATLIGRAYVPVEELLDGEEIDKWVEILDKDKNPIHEGSKIHVKLQYFDITKDRNFARGIRSPKFPGVPYTFFSQRQGCRVSLYQDAHVPDNFVPKIPLAGGKNYEPHRCWEDIFDAITKAKHLIYITGWSVYTEISLVRDSRRPKAGGDTTLGELLKKKAIEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETAQFFNDTEVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSELPNGGSDRRRLVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVPLRELEDAIIPPSPVMFPDDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFAWSAEDIKPEDIGALHVIPRELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQKRTMEMMYKDIIQALRAKGIEDDPRNYLTFFCLGNREVKKQGEYEPTEQPEPDSDYKRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLATRQPARGQIHGFRMSLWYEHLGMLHDSFFQPESEECVNKVNQIADKYWDLYSNESLEHDLPGHLLRYPIGVSGEGDVTELPGFEFFPDTKARVLGGKADYLPPILTT 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3976g00061 801 SMART C2_3c 9 117 IPR000008 -
Gabi3976g00061 801 CDD C2_plant_PLD 2 141 - -
Gabi3976g00061 801 SMART pld_4 647 674 IPR001736 GO:0003824
Gabi3976g00061 801 SMART pld_4 319 357 IPR001736 GO:0003824
Gabi3976g00061 801 FunFam Phospholipase D delta 194 437 - -
Gabi3976g00061 801 Pfam Phospholipase D C terminal 720 790 IPR024632 -
Gabi3976g00061 801 PIRSF PLD_plant 1 801 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gabi3976g00061 801 Gene3D C2 domain 6 152 IPR035892 -
Gabi3976g00061 801 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 142 IPR035892 -
Gabi3976g00061 801 SUPERFAMILY Phospholipase D/nuclease 144 439 - -
Gabi3976g00061 801 Gene3D Endonuclease Chain A 193 435 - -
Gabi3976g00061 801 Pfam C2 domain 8 120 IPR000008 -
Gabi3976g00061 801 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 319 357 IPR001736 GO:0003824
Gabi3976g00061 801 Pfam Phospholipase D Active site motif 319 357 IPR001736 GO:0003824
Gabi3976g00061 801 Pfam Phospholipase D Active site motif 648 674 IPR001736 GO:0003824
Gabi3976g00061 801 ProSiteProfiles C2 domain profile. 1 118 IPR000008 -
Gabi3976g00061 801 PANTHER PHOSPHOLIPASE D 4 789 IPR015679 -
Gabi3976g00061 801 Gene3D Endonuclease Chain A 473 693 - -
Gabi3976g00061 801 FunFam Phospholipase D 460 693 - -
Gabi3976g00061 801 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 647 674 IPR001736 GO:0003824
Gabi3976g00061 801 SUPERFAMILY Phospholipase D/nuclease 444 731 - -
Gabi3976g00061 801 CDD PLDc_pPLDalpha_2 485 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3976g00061 Gabi-Chr3976 589820 593742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3976g00061 1 801 Phospholipase D Gene Family (Wang group) AT3G15730 81.481 0.0 1406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3976g00061 K01115 - gmx:100786410 1556.96