Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3976g00060 ATGGCGCAAATTTTGCTTCATGGGACTCTCCACGCCACCATCTACGAGGTTGATAAGCTCAACGCTGGTGGTGGTGGGAATTTTTTCAGCATTGAGGAGACAGTTGGTCTTGGAAAGGGAGTTACTAAACTTTATGCAACCATTGATCTGGAGAAGGCAAGAGTGGGAAGGACCAGAATGATAGAAAATGAACGTACTAATCCCAAATGGTATGAGTCTTTTCACATTTATTGTGCCCATATGGCTTCAAATGTTGTATTCACTGTGAAAGATGATAATCCTATTGGAGCAACTTTGATTGGAAGAGCATATGTGCCCGTTGAGGAGCTCTTGGATGGTGAAGAAATAGATAAATGGGTTGAAATCTTGGATAAGGATAAAAATCCAATACATGAGGGTTCAAAGATCCATGTGAAGCTGCAATATTTTGATATCACAAAAGATCGCAACTTTGCTCGAGGCATTAGAAGTCCTAAATTTCCTGGAGTTCCCTATACTTTCTTCTCACAAAGGCAAGGATGCAGGGTATCTCTGTACCAAGATGCTCATGTGCCAGATAATTTTGTCCCTAAAATACCACTTGCTGGAGGCAAGAATTATGAGCCTCATAGGTGTTGGGAGGATATTTTTGATGCAATCACTAAAGCAAAACACTTAATATACATTACTGGTTGGTCTGTTTATACTGAAATTTCCTTGGTAAGGGATTCTAGGAGGCCAAAGGCTGGGGGAGACACAACACTTGGTGAGCTTCTCAAGAAAAAGGCAATTGAAGGTGTAAGGGTTTTGATGCTTGTTTGGGATGATAGAACATCAGTTGGTTTGTTGAAAAAAGATGGATTGATGGCTACTCATGATGAAGAAACTGCCCAGTTCTTCAATGACACTGAAGTGCACTGTGTTTTATGCCCCCGTAATCCTGATGATGGAGGTAGCATTGTTCAAGATTTACAAATTTCTACCATGTTTACTCATCACCAGAAGATTGTGGTGGTTGACAGTGAGTTGCCAAATGGAGGGTCAGATAGGCGAAGACTTGTGAGTTTTGTTGGGGGCATTGATCTTTGTGATGGAAGATATGATACAGCCTTTCACTCACTTTTCAGAACCCTTGACACAGCACACCATGATGATTTTCATCAACCTAACTTTCCTGGTGCTGCAATCACAAAAGGTGGTCCCAGGGAACCTTGGCATGACATTCACTCCCGGCTTGAAGGACCAATAGCATGGGATGTTTTGTTTAACTTTGAGCAGAGATGGAGGAAGCAAGGTGGAAAGGATTTACTTGTTCCACTGAGAGAGCTTGAAGATGCCATTATCCCTCCATCTCCAGTAATGTTTCCTGATGATCATGAGACATGGAATGTTCAGTTATTTAGATCTATTGATGGTGGGGCTGCTTTTGGTTTCCCAGAGACTCCTGAAGATGCTGCCAGAGCTGGGCTTGTTAGTGGGAAGGATAATATCATTGATCGAAGCATTCAAGATGCGTATATTAATGCTATTCGACGTGCAAAGAATTTCATCTATATTGAAAATCAGTATTTCCTTGGAAGCTCTTTTGCCTGGAGTGCTGAGGATATTAAGCCCGAAGATATTGGTGCTTTGCATGTAATCCCAAGGGAACTTTCACTTAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTCACGGTGTATGTTGTGGTTCCAATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAGAAGAGAACAATGGAGATGATGTACAAGGACATTATTCAGGCACTGAGGGCTAAGGGAATTGAGGATGATCCTCGGAACTATTTGACATTCTTCTGCCTAGGTAATAGGGAAGTGAAGAAACAAGGAGAGTATGAGCCTACTGAACAACCAGAACCTGATTCAGATTATAAGAGAGCCCAAGAAGCTCGGCGTTTCATGATTTATGTTCATACCAAGATGATGATAGTTGATGACGAATACATAATCATTGGATCTGCCAACATCAACCAGAGATCAATGGATGGTGCCAGGGATTCTGAGATTGCAATGGGTGCTTATCAGCCCTATCATTTGGCTACCAGGCAACCTGCAAGGGGTCAGATTCATGGTTTCCGCATGTCATTGTGGTATGAACACCTTGGCATGCTTCATGACTCCTTCTTCCAGCCAGAAAGTGAAGAATGTGTTAATAAGGTGAACCAGATTGCTGACAAGTATTGGGATCTCTATTCTAATGAGTCACTTGAGCATGACCTTCCTGGACACCTGCTCCGCTATCCTATCGGGGTTTCCGGGGAAGGAGATGTCACAGAGCTGCCAGGATTTGAATTCTTCCCTGACACCAAGGCTCGTGTTCTTGGTGGCAAAGCTGACTACCTCCCCCCTATCCTTACTACTTAG 2412 0.4303 MAQILLHGTLHATIYEVDKLNAGGGGNFFSIEETVGLGKGVTKLYATIDLEKARVGRTRMIENERTNPKWYESFHIYCAHMASNVVFTVKDDNPIGATLIGRAYVPVEELLDGEEIDKWVEILDKDKNPIHEGSKIHVKLQYFDITKDRNFARGIRSPKFPGVPYTFFSQRQGCRVSLYQDAHVPDNFVPKIPLAGGKNYEPHRCWEDIFDAITKAKHLIYITGWSVYTEISLVRDSRRPKAGGDTTLGELLKKKAIEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETAQFFNDTEVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSELPNGGSDRRRLVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVPLRELEDAIIPPSPVMFPDDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFAWSAEDIKPEDIGALHVIPRELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQKRTMEMMYKDIIQALRAKGIEDDPRNYLTFFCLGNREVKKQGEYEPTEQPEPDSDYKRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLATRQPARGQIHGFRMSLWYEHLGMLHDSFFQPESEECVNKVNQIADKYWDLYSNESLEHDLPGHLLRYPIGVSGEGDVTELPGFEFFPDTKARVLGGKADYLPPILTT 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3976g00060 803 FunFam Phospholipase D 462 695 - -
Gabi3976g00060 803 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 649 676 IPR001736 GO:0003824
Gabi3976g00060 803 PIRSF PLD_plant 1 803 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gabi3976g00060 803 Gene3D C2 domain 6 154 IPR035892 -
Gabi3976g00060 803 Gene3D Endonuclease Chain A 195 437 - -
Gabi3976g00060 803 FunFam Phospholipase D delta 196 439 - -
Gabi3976g00060 803 Pfam C2 domain 8 122 IPR000008 -
Gabi3976g00060 803 Pfam Phospholipase D Active site motif 321 359 IPR001736 GO:0003824
Gabi3976g00060 803 Pfam Phospholipase D Active site motif 650 676 IPR001736 GO:0003824
Gabi3976g00060 803 Gene3D Endonuclease Chain A 475 695 - -
Gabi3976g00060 803 PANTHER PHOSPHOLIPASE D 4 791 IPR015679 -
Gabi3976g00060 803 Pfam Phospholipase D C terminal 722 792 IPR024632 -
Gabi3976g00060 803 CDD PLDc_pPLDalpha_2 487 696 - -
Gabi3976g00060 803 SUPERFAMILY Phospholipase D/nuclease 146 441 - -
Gabi3976g00060 803 SMART pld_4 649 676 IPR001736 GO:0003824
Gabi3976g00060 803 SMART pld_4 321 359 IPR001736 GO:0003824
Gabi3976g00060 803 ProSiteProfiles C2 domain profile. 1 120 IPR000008 -
Gabi3976g00060 803 SMART C2_3c 9 119 IPR000008 -
Gabi3976g00060 803 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 144 IPR035892 -
Gabi3976g00060 803 CDD C2_plant_PLD 2 143 - -
Gabi3976g00060 803 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 321 359 IPR001736 GO:0003824
Gabi3976g00060 803 SUPERFAMILY Phospholipase D/nuclease 446 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3976g00060 Gabi-Chr3976 589820 593742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3976g00060 1 803 Phospholipase D Gene Family (Wang group) AT3G15730 81.728 0.0 1413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3976g00060 K01115 - gmx:100786410 1561.97