Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3976g00043 ATGGCTTTTTGGTTTTGTTGCGGAAGTGCTTCGGATCGCAAAAAACGAGGGAAAGAACAACCTACATGGCGAGTGTTTTCTTTGAAGGAATTACACTCTGCTACAAATAATTTCAACTATGATAACAAGCTTGGAGAAGGGAGCTTTGGCAGTGTGTACTGGGGTCAACTTTGGGATGGATCACAAATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCAGATATGGAATTTGCTGTTGAAGTTGAAATACTGGCAAGAGTACGACACAAGAATCTTCTTAGTCTACGTGGCTATTGTGCTGAAGGACAGGAACGGTTAATTGTATATGAATATATGCCAAATTTGAGCCTTCTCTCACATCTTCATGGACAGCACTCAGCGGAAAGCCTTCTAGATTGGAATCGGCGAATGAATATTGCTATTGGGTCTGCTGAGGGAATTGTATATCTTCACCATCAAGCAACACCACATGTCATCCACAGGGATATTAAAGCAAGCAATGTGTTGTTGGATTCAGATTTCCAAGCCCGGGTTGCTGATTTTGGGTTTGCTAAATTGATCCCTGATGGGGCAACTCATGTGACTACAAAAGTTAAGGGTACCCTGGGCTACCTTGCACCAGAATATGCTATGTTAGGTAAAGCGAACGAGAGTTGTGATGTCTACAGTTTTGGTATTCTCCTTCTAGAACTCGCCAGTGGCAGAAAACCAGTTGAAAAGATTAGTTCCACGGTGAGGCGATCAATAGTTGATTGGGCATTTCCATTGGTTTGTGAGAAGAAATTCAGTGAAATTGCTGATCCCAGACTAAATGGTAACTATGTGGAGGAAGAGCTTAAAAGAGTTATTTTTGTTGCATTGGTGTGTGCTCAGAATCTACCTGACAAGAGACCCACCATGCTTGATGTGGTAGAGCTATTGAAGGGAGAATCTAAAGATAAACTTTCTCTTATAGAGAATAGTGAAATGTTTAGAAGCCCTCTAGCTGTAGAATACAATGATGATGGGACATTAGCAGCTGAAGACAGTTTGGACTTTATATATGAAGAAAAAGAATTAAAACATGAGTTGAAAGAGAATACTGAGCTATGA 1098 0.4062 MAFWFCCGSASDRKKRGKEQPTWRVFSLKELHSATNNFNYDNKLGEGSFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYEYMPNLSLLSHLHGQHSAESLLDWNRRMNIAIGSAEGIVYLHHQATPHVIHRDIKASNVLLDSDFQARVADFGFAKLIPDGATHVTTKVKGTLGYLAPEYAMLGKANESCDVYSFGILLLELASGRKPVEKISSTVRRSIVDWAFPLVCEKKFSEIADPRLNGNYVEEELKRVIFVALVCAQNLPDKRPTMLDVVELLKGESKDKLSLIENSEMFRSPLAVEYNDDGTLAAEDSLDFIYEEKELKHELKENTEL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3976g00043 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Gabi3976g00043 365 FunFam PTI1-like tyrosine-protein kinase At3g15890 10 113 - -
Gabi3976g00043 365 ProSitePatterns Protein kinases ATP-binding region signature. 44 66 IPR017441 GO:0005524
Gabi3976g00043 365 Gene3D Transferase(Phosphotransferase) domain 1 114 326 - -
Gabi3976g00043 365 SMART serkin_6 38 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3976g00043 365 Gene3D Phosphorylase Kinase; domain 1 8 113 - -
Gabi3976g00043 365 CDD STKc_IRAK 44 311 - -
Gabi3976g00043 365 SUPERFAMILY Protein kinase-like (PK-like) 20 309 IPR011009 -
Gabi3976g00043 365 PANTHER OS01G0253100 PROTEIN 19 315 - -
Gabi3976g00043 365 ProSiteProfiles Protein kinase domain profile. 38 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3976g00043 365 Pfam Protein kinase domain 39 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3976g00043 365 FunFam PTI1-like tyrosine-protein kinase At3g15890 114 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3976g00043 Gabi-Chr3976 441539 445072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3976g00043 7 337 Trihelix Transcription Factor Family AT1G70460 47.337 1.76e-95 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Gabi3976g00043 Pkinase 5.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3976g00043 - - gmx:100791193 614.379