Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3976g00023 ATGGAGGAGTCAGGGGAAAATTGGCCTTCTGATTCTAATTTGGAAGTGGGTGATCATGATTATAACGATTTATGTTTTGATGATGAAGAGTTCCTTGGTGATGATGATGAGAATCATTATTTTGCTGAAACTGTAGATCCCATGATTGGCGACACCGACAGAAACGGGAGACGGCGGGAACTCACTGAAAGGTTGCTTGCACTTTCAGCCACCATACCTGGCTTGAAGAAGAAGATGGACAATACTTCTATCCTGGACAGAGCTAGCAACTACGTGAAACAACTTCAACAACGTGTGAGAGAGTTAGAACAAGAAATTGAATCCCACATTTGTAGCGACAAAGGCACCACCTCTTGCGAAGTGAACTCTGGTGATTATTATGGACCGAATGATATTCTTCCCGAGGTTAAAGCTAGAGTATTACAGAAGGAAGTACTCGTCATAATCCATTGTGAGAAACAAAAGGGAATTATGAACAAAATACTATCCCAGCTTCAAATTCTTCATCTCTCAGTACAAAACAGCAGTGTCTTGCCATTTGGGAAATCCACTCTCGACATCACCATTATTGCTCAGATGGGTGATGGATACAACATGACAGTGGATGAACTGGTGAAAAACCTGAGACTATCGATCTCGAAACAATAG 648 0.4167 MEESGENWPSDSNLEVGDHDYNDLCFDDEEFLGDDDENHYFAETVDPMIGDTDRNGRRRELTERLLALSATIPGLKKKMDNTSILDRASNYVKQLQQRVRELEQEIESHICSDKGTTSCEVNSGDYYGPNDILPEVKARVLQKEVLVIIHCEKQKGIMNKILSQLQILHLSVQNSSVLPFGKSTLDITIIAQMGDGYNMTVDELVKNLRLSISKQ 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3976g00023 215 PANTHER BHLH TRANSCRIPTION FACTOR 54 213 - -
Gabi3976g00023 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 111 IPR036638 GO:0046983
Gabi3976g00023 215 SMART finulus 50 101 IPR011598 GO:0046983
Gabi3976g00023 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Gabi3976g00023 215 Pfam Helix-loop-helix DNA-binding domain 57 96 IPR011598 GO:0046983
Gabi3976g00023 215 Gene3D - 52 109 IPR036638 GO:0046983
Gabi3976g00023 215 Coils Coil 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3976g00023 Gabi-Chr3976 215377 219510 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3976g00023 57 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.857 3.74e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3976g00023 HLH 0.00013 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3976g00023 - - aip:107616596 236.884