Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3976g00022 ATGACGCATGATGAACCCTTCAAGCACCGTGAGTATATGAAGAACCCCACTACTCTTTCACTTCCTGATATGGAGGACTCATGGGAAAATTGGCTCTCTCATTTGGGAATGAGTTGGAATTCTGCCACAGTCACTGCCACCGCCGCCGTCGTCAGTGGTTTATCTTTTGAAGAGATTGTAAGCTTCGACGGCCACTATTCCGATAGCTCCAATGGTGTAAAACAACACTACTCTTATTTGAAGACAATACAAGAGGAGTTAGCAAGTTATTGTTCATCTCCTTTGACAACAAAAAGGGCTCTAGGGAACTATGAGTCTGAGCCAAAGGAGAATAGAGTAACAAAGAAGGCCAGAAGCTCTTCTGAGGCATTACATCACATAATGTCAGAGAGAAAAAGAAGACAGGACATAGCCGAGAAATTCATAGCACTTTCAGCTACTATACCTGGCTTGAAGAAGACAGACAAGGCCTCTATACTTCAGGAAGCCATTAATTACGTGAAGCAACTTCAACAACGCATAGCAGTGCTGGAAAAAGAGACAAACAAGAAAAGTATAAAGTCATTGTTCATCAATAAATCACACCTTTGTTCGGTATCATGTGAAACAAAATCTAATGGTTATTATGGAGCCTATGAAGTGCTCCCTGAAGTCGAAGCAAGAGGCTTAGGGAAGGAAGTGCTCATTAGAATCCATTGTGAGAAACGAAATGGCATCTTGCTCAAGTTATTGGCCCTATTAAAAAATATTCATCTCTCAATAGCCAGTAGCAGCATATTGCCATTTGGAAACTCTATTTTCAACATTATCATTGTTGCTCAGATGAGCGAAGAATACAAGTTGACGGTGAACGATTTGGTGAAGACATTGAAACAGAATCTTTTTGAAGTTGTATGA 897 0.4058 MTHDEPFKHREYMKNPTTLSLPDMEDSWENWLSHLGMSWNSATVTATAAVVSGLSFEEIVSFDGHYSDSSNGVKQHYSYLKTIQEELASYCSSPLTTKRALGNYESEPKENRVTKKARSSSEALHHIMSERKRRQDIAEKFIALSATIPGLKKTDKASILQEAINYVKQLQQRIAVLEKETNKKSIKSLFINKSHLCSVSCETKSNGYYGAYEVLPEVEARGLGKEVLIRIHCEKRNGILLKLLALLKNIHLSIASSSILPFGNSIFNIIIVAQMSEEYKLTVNDLVKTLKQNLFEVV 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3976g00022 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983
Gabi3976g00022 298 ProSiteProfiles ACT domain profile. 228 298 IPR002912 -
Gabi3976g00022 298 SMART finulus 127 176 IPR011598 GO:0046983
Gabi3976g00022 298 Pfam Helix-loop-helix DNA-binding domain 125 171 IPR011598 GO:0046983
Gabi3976g00022 298 Gene3D - 119 190 IPR036638 GO:0046983
Gabi3976g00022 298 PANTHER BHLH TRANSCRIPTION FACTOR 37 295 - -
Gabi3976g00022 298 Coils Coil 160 187 - -
Gabi3976g00022 298 MobiDBLite consensus disorder prediction 104 124 - -
Gabi3976g00022 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 185 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3976g00022 Gabi-Chr3976 197171 199738 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3976g00022 59 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.458 4.16e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3976g00022 HLH 3.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3976g00022 - - gmx:100778916 301.212