Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3976g00020 ATGGAAGAGTCATGGGAGAATTGGGATCTTCATATGGAAATGGATTGTCACGACGATTTCTTTGAAGAGTGTCACCCTGAAGATGATGAATTCTTCAAAGACATCATCCTTCAGCAGCCAGCAGCTTTATCATCTGAAAGTGAAAGTGATAACTCCTTTCATGATTCATCCAATATTGTCCAAAATAATTCCGATATCCCCACGGTGGTCGTTGCAGCCGCAGACGGCGGTGTTATATCCCCTCCTCATGGGAACATGGTCAAAAGTAACAGCTCCAACTCCATTATAGTGTCTCAACAAGGTTCCAAAAGGCCTCGTCGCTCGTTGTCTCCAAGGACATACATTTTATCTTTTGATAACTCAACAATGACACCATCTACCCCTGAACCTTGCTTCAATAATAACCAATTATTGGGCACTGAGGGAACAACTTTGCCCTCAAAACGGACCCTCAAAAGCCAAAAACCTGAACCAAAACAAGGAGCAATAAAGAGAGCTAGAAGCTCTTCTCAGACTACCGATCACATAATGGCAGAGAGAAAAAGGAGACAGGAACTCACAGAGAGGTTCATAGCACTTTCAGCTACAATTCCCAGCTTGAACAAGACGGACAAGGCTTCTGTGCTTCGAGCAGCTATTGATTATGTGAAACAACTTCAAGAACGTGTAGAGGAACTAGAAATACAAGACAATAATAAGAGGGGTGTAGAGTCAGTGATATTCATCAAGAAACCCGATATACGAGGAAATGAAGACAACAACAACTACAGTGAAACAAGTACTTCTGATTATTGTAACATCCTCCCTGAGATTGAAGCAAGAATCTTGGGGAAGGAGGTGCTCATTGAGATTCACTGTGAGAAAGAAAATGGCATTGAGCTCAAAATACTGGACCACCTTGAAAATCTTGATCTCTGTGTCACCGGTAGCAATGCCTTGCCATTTGGGAATTTCTCTCTTTACATGACTATTATCACTCAGATGGGTGAGGAGTACAAGATGACAGTGAATGATCTAGTAAAAAACCTTAGACAAATGCTCTTGAAGTCACCAATGTCCTGCGACAGTGATCCGTACTAG 1080 0.4213 MEESWENWDLHMEMDCHDDFFEECHPEDDEFFKDIILQQPAALSSESESDNSFHDSSNIVQNNSDIPTVVVAAADGGVISPPHGNMVKSNSSNSIIVSQQGSKRPRRSLSPRTYILSFDNSTMTPSTPEPCFNNNQLLGTEGTTLPSKRTLKSQKPEPKQGAIKRARSSSQTTDHIMAERKRRQELTERFIALSATIPSLNKTDKASVLRAAIDYVKQLQERVEELEIQDNNKRGVESVIFIKKPDIRGNEDNNNYSETSTSDYCNILPEIEARILGKEVLIEIHCEKENGIELKILDHLENLDLCVTGSNALPFGNFSLYMTIITQMGEEYKMTVNDLVKNLRQMLLKSPMSCDSDPY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3976g00020 359 PANTHER BHLH TRANSCRIPTION FACTOR 44 349 - -
Gabi3976g00020 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 229 IPR036638 GO:0046983
Gabi3976g00020 359 Coils Coil 209 236 - -
Gabi3976g00020 359 SMART finulus 176 225 IPR011598 GO:0046983
Gabi3976g00020 359 MobiDBLite consensus disorder prediction 84 111 - -
Gabi3976g00020 359 MobiDBLite consensus disorder prediction 137 177 - -
Gabi3976g00020 359 MobiDBLite consensus disorder prediction 137 151 - -
Gabi3976g00020 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Gabi3976g00020 359 MobiDBLite consensus disorder prediction 83 111 - -
Gabi3976g00020 359 Gene3D - 168 238 IPR036638 GO:0046983
Gabi3976g00020 359 Pfam Helix-loop-helix DNA-binding domain 173 220 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3976g00020 Gabi-Chr3976 180689 183548 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3976g00020 166 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.262 3.70e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3976g00020 HLH 2.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3976g00020 - - aprc:113857138 445.662