Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3976g00017 ATGGAGGAGCCATGCCAGAATTGGTTCTCTGATATGGAAATACAAGATGTTGATTTCCTTAATCAACACCATAAGATTGTTTCATTGGGTGATGAAGATCAGATCTTTCGAGAGATCATGCATCGGCCAGCTTTCTCTTCTGAAAGCGAAAGTCACTCTCCTACCAATCAAAATAAATCCGCAGCCGCTCTTGAAGGTGGCAACGGCTCAACCGTGGCCAAAAACAGCCGTGACAATAACTTGATGATGAAGGACAACAACAGCTCCAACAACTTCATCTTCTCTCAACATGCACTGGAGAAACCAGCCAATGCTACCTCTCCAACGGCTTATATTCTGTCCTTCGGTGACTCCACCGTAGTAGCAGCTACCCGCCACCAAACCTACGGCGGAAACCAGCCCTACCACGAGCAAGTAGGTTTCTCTGGTGGTGGCACATGTCCTCCTCCCTCTAAAGGGATCTCAGAAAAACTTGACTTAGAACCAAGGGTCAACCAAACAACAAGGAAGACTAGAAGCTCTGCAGAGACACTAGACCACATAATGGCAGAGAGAAAAAGGAGACGTGAACTCACAGAGAGGTTCATTGCACTTTCAGCCACTATACCTGGCTTGAAGAAGATTGACAAGGCAACTATACTTAGCGAAGCAATCATTCATGTGAAACGACTTAAAGAACGTGTAAGAGAGCTAGAAGAACAAAGCAAGAAGACAAGAGTAGAGTCAGTGTCATTCATTCAGAAATCCCACCTCTCAACTGAAAATAAAGGCACCACCCTCTCTGGTGCAATGAACAGTACTGATGATTGCTATAGAACCAATGAAGCACTCCCTACAGTTGAAGCAAGAGTCTTTAAAAAGGACGTGCTCCTAAGGATTCACTGCAAGATACAAAGTGGCATTTTGCTCAAAATTTTGGCCCATCTTAAAAGTCTTGATCTCTCCACAATCAGCAACAGCGTCTTGCCATTTGGGAGTTCTACTCTTGACATCAGCATTGTTGCTCAGATGGGTGACAAATTCAGTGTAGCAATGGATGATCTAGTAACAAACCTTAGATTAGCCCTCTTGGAATCATCTGAAGTACAAAGTGATCCATGCTAG 1104 0.4429 MEEPCQNWFSDMEIQDVDFLNQHHKIVSLGDEDQIFREIMHRPAFSSESESHSPTNQNKSAAALEGGNGSTVAKNSRDNNLMMKDNNSSNNFIFSQHALEKPANATSPTAYILSFGDSTVVAATRHQTYGGNQPYHEQVGFSGGGTCPPPSKGISEKLDLEPRVNQTTRKTRSSAETLDHIMAERKRRRELTERFIALSATIPGLKKIDKATILSEAIIHVKRLKERVRELEEQSKKTRVESVSFIQKSHLSTENKGTTLSGAMNSTDDCYRTNEALPTVEARVFKKDVLLRIHCKIQSGILLKILAHLKSLDLSTISNSVLPFGSSTLDISIVAQMGDKFSVAMDDLVTNLRLALLESSEVQSDPC 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3976g00017 367 SMART finulus 181 230 IPR011598 GO:0046983
Gabi3976g00017 367 MobiDBLite consensus disorder prediction 46 84 - -
Gabi3976g00017 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 243 IPR036638 GO:0046983
Gabi3976g00017 367 Pfam Helix-loop-helix DNA-binding domain 180 224 IPR011598 GO:0046983
Gabi3976g00017 367 Gene3D - 173 249 IPR036638 GO:0046983
Gabi3976g00017 367 PANTHER BHLH TRANSCRIPTION FACTOR 44 358 - -
Gabi3976g00017 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Gabi3976g00017 367 MobiDBLite consensus disorder prediction 45 84 - -
Gabi3976g00017 367 Coils Coil 214 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3976g00017 Gabi-Chr3976 166583 168662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3976g00017 171 356 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.624 7.19e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3976g00017 HLH 6.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3976g00017 - - gmx:100777846 461.07