Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3976g00016 ATGAACGGCGAAATTTTCTTACATGAAACCACAACCACCAAAACGGCGCTCGAAGGAATCGCTGTGGTCGTTGGAGAACACGTCCTCTTTGGACCCAACTACAACAAAACGGCCACGTTTTCGGCTTCCATTTTGGTTTCGGAGCCTGTGACTCCAAAGAAGGTGGAGAACACCGTTAATGTTTCGGTTAACAAGAGCTACAGGGGAGTGAGGAAGAGACCTTGGGGTAGGTGGTCGGCGGAGATACGAGACCGAATAGGTCGGTGCCGCCACTGGCTGGGGACCTTCGACACGGCCGAGGAGGCGGCGCGTGCTTATGACGCGGCCGCAAGGCGCTTGAGAGGCTCCAAGGCTCGGACAAACTTCAAGGCACCGCCGGTGTTACCACTATCGCCGCCGTCAACCTCGGAAGTTAAACTTTTGAGTGGTGGTACCGTTAAGCCGAAAACCACGCCCAACAGTACTAGGAAGTGTTCCGTGGTTACCTCTGTAGAACAATTGTTCAGTGTAGGTTAA 516 0.5368 MNGEIFLHETTTTKTALEGIAVVVGEHVLFGPNYNKTATFSASILVSEPVTPKKVENTVNVSVNKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFKAPPVLPLSPPSTSEVKLLSGGTVKPKTTPNSTRKCSVVTSVEQLFSVG 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3976g00016 171 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 54 140 - -
Gabi3976g00016 171 MobiDBLite consensus disorder prediction 124 154 - -
Gabi3976g00016 171 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Gabi3976g00016 171 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Gabi3976g00016 171 Pfam AP2 domain 66 115 IPR001471 GO:0003700|GO:0006355
Gabi3976g00016 171 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Gabi3976g00016 171 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Gabi3976g00016 171 MobiDBLite consensus disorder prediction 135 154 - -
Gabi3976g00016 171 CDD AP2 65 124 IPR001471 GO:0003700|GO:0006355
Gabi3976g00016 171 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Gabi3976g00016 171 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Gabi3976g00016 171 Gene3D AP2/ERF domain 65 124 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3976g00016 Gabi-Chr3976 142750 143265 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3976g00016 12 169 AP2-EREBP Transcription Factor Family AT1G80580 53.750 4.14e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3976g00016 AP2 9.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3976g00016 - - gmx:102667667 189.119