Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3975g00004 ATGGCTTACCATTGCAACCGGCAAAATAAGCATCCTCTTCCCACTTCAATCCTTTTCTTCAAGATTATTCTTCCGACAAGTCTTCAAGATGGAAAGCTTATGATCCCAAAAAAATTCACTGGGAAATATGGTGGTGAGATGTCAAACCCAGTGTTTCTCAAGCCTCCAGATGGCACTGAATGGGAAGTATTTTGGAGTAGAAAAGATGGTTATATTTGGCTTCAAAAGGGTTGGAAAGAATTTGCTACATATTACTCCCTAAAGCATGGCCACATGGTGTTGTTTGAATACAAGAAAACTTCTCATTTTGAGGACAACCTTGACCAGATTAGTGATGATGACTCAGTTAAAATTTCGGATGAGTTACCACCATGCCATAAGACTAGAATGAAATCACCAACGTCTTCTCCTCAACCATGTAAGAAATTGACAACTGGCACAAGTCGAGGTGTTAAGAGAAGAGCCACTGAGCAAAATCTGCCTCATCATGTCCAAATTGAAGGTACAAACTATGATGAGTTTAAATTTGCATCTGTAAAGAAAGAATCAGATGAGGATATGGGTGGTACCACTGAACATGACAACCTTGACCAGAACCAGATTCATGATGACTCAGTCAGAAGTTTGGATGAGACACCACCGTGCCGTATGGCTAGACAGAAAGCACCAATGCCTTGTCCTAAACCATGTAAAAGATTAAGAACTGGCACTAGTGGAGATGTTGAAAGAAGATCCACTTTGCGAAAGTTGCCTCAGCGTGTCCAAATTAAGAGTAATCAATTTCACGAGGAAATGGATGGTACCACTGAAGGCTTAAAAGTGGAGCAGTCAACTTCTAAAAGTACTGAAGCTTTAAAGAAAACCACAACCTTCAGATCTAAAAAACCCTCTTTCACGATTGTCATGAAGCCTTCCTATGTTGATCGACATTGCTTGCATGTCCCAGTACAATTTGCTAAAAAGTATTTGAAGAAAAAGGAAAGGATTATCCTTCTTCAGGTTTTGGATGGAGGAACTTGGCATTGTAGTTATAGCCAGGGCAAAATTGTTGCTGGATGGAAGAAATTTGTATCAGAAAATAATTTGAAAGTGGGGGATGTTTGTCTTTTTGAGCTGACCAACAGCCAAGGCCTTTCTTTGCAAGTACAAATCTTGCAACTTGCAGAAGTACCCCATTCCCCTCCAGTCCAAGAATCACTTCAAGGAGAGGAATCTATTGGTTATATACCCTTGGAGAGTACTGTGATGTTGGAAAGTAAAACTATTATTGCTAGAAAATGTGGGAAGACAAATCCCTGCCCCTTCACAAATGGAGCTCTGAAAGAAGCTAAAAAATTCACCTCAGAAAATCCCTTTTTCAGGGTCAATTTTAGGCTGGGAAAGAGACCGAATGTACCAATTCCCTTCATGAGAGAGTACTTCAACAAGAAGACGCAGATTGTGAAGTTTCAGTTTGGAAATAAATTGTGGCCTGTAAAGTTTTTGTGTTGTCAACACGGAAATTCTAATTGCGGGAAGTTTTCTAGTGGTTGGTTCTTGTTTGCAGAAGTAAGTAAATTGGTAGATGGAGATATATGTGTGCTTGAGCTCATCAACAGAAAAGAGGCAGTGCTTGATGTTCATATTTTCAGAAACCACTGTTAG 1644 0.3984 MAYHCNRQNKHPLPTSILFFKIILPTSLQDGKLMIPKKFTGKYGGEMSNPVFLKPPDGTEWEVFWSRKDGYIWLQKGWKEFATYYSLKHGHMVLFEYKKTSHFEDNLDQISDDDSVKISDELPPCHKTRMKSPTSSPQPCKKLTTGTSRGVKRRATEQNLPHHVQIEGTNYDEFKFASVKKESDEDMGGTTEHDNLDQNQIHDDSVRSLDETPPCRMARQKAPMPCPKPCKRLRTGTSGDVERRSTLRKLPQRVQIKSNQFHEEMDGTTEGLKVEQSTSKSTEALKKTTTFRSKKPSFTIVMKPSYVDRHCLHVPVQFAKKYLKKKERIILLQVLDGGTWHCSYSQGKIVAGWKKFVSENNLKVGDVCLFELTNSQGLSLQVQILQLAEVPHSPPVQESLQGEESIGYIPLESTVMLESKTIIARKCGKTNPCPFTNGALKEAKKFTSENPFFRVNFRLGKRPNVPIPFMREYFNKKTQIVKFQFGNKLWPVKFLCCQHGNSNCGKFSSGWFLFAEVSKLVDGDICVLELINRKEAVLDVHIFRNHC 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3975g00004 547 ProSiteProfiles B3 DNA-binding domain profile. 297 388 IPR003340 GO:0003677
Gabi3975g00004 547 CDD B3_DNA 460 544 IPR003340 GO:0003677
Gabi3975g00004 547 SUPERFAMILY DNA-binding pseudobarrel domain 293 385 IPR015300 -
Gabi3975g00004 547 CDD B3_DNA 18 103 IPR003340 GO:0003677
Gabi3975g00004 547 SMART B3_2 19 106 IPR003340 GO:0003677
Gabi3975g00004 547 SMART B3_2 298 388 IPR003340 GO:0003677
Gabi3975g00004 547 SMART B3_2 452 546 IPR003340 GO:0003677
Gabi3975g00004 547 Gene3D - 15 106 IPR015300 -
Gabi3975g00004 547 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 441 545 IPR044837 -
Gabi3975g00004 547 SUPERFAMILY DNA-binding pseudobarrel domain 17 103 IPR015300 -
Gabi3975g00004 547 Gene3D - 436 546 IPR015300 -
Gabi3975g00004 547 Gene3D - 277 389 IPR015300 -
Gabi3975g00004 547 CDD B3_DNA 296 385 IPR003340 GO:0003677
Gabi3975g00004 547 SUPERFAMILY DNA-binding pseudobarrel domain 447 546 IPR015300 -
Gabi3975g00004 547 MobiDBLite consensus disorder prediction 129 151 - -
Gabi3975g00004 547 MobiDBLite consensus disorder prediction 123 151 - -
Gabi3975g00004 547 ProSiteProfiles B3 DNA-binding domain profile. 465 546 IPR003340 GO:0003677
Gabi3975g00004 547 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Gabi3975g00004 547 MobiDBLite consensus disorder prediction 216 245 - -
Gabi3975g00004 547 MobiDBLite consensus disorder prediction 180 202 - -
Gabi3975g00004 547 Pfam B3 DNA binding domain 19 103 IPR003340 GO:0003677
Gabi3975g00004 547 Pfam B3 DNA binding domain 298 385 IPR003340 GO:0003677
Gabi3975g00004 547 Pfam B3 DNA binding domain 465 545 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3975g00004 Gabi-Chr3975 37749 40309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3975g00004 19 129 B3 DNA Binding Superfamily AT4G01580 35.938 6.77e-17 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi3975g00004 B3 1.5e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3975g00004 - - ccaj:109791753 325.865