Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3974g00043 ATGGCAACCATTCAGCTCCTCAGAATTCAAAACACTCTGTCCGTGCATGTTTTTCTTCTTCAGTTTTCATCACTGCTGTTCCCCTCACTCGGCTACACTCTCCCAGATAAGTACTTCATCAATTGTGGGTCAGATGTTAATGTTACTGAAAGTGGTCACGTTTACGTTGGAGAATCAAACCCAATAGTCAGATTTAGCAGCAGCAACAAAGAAAGCACACAGTCATCAGTGCCTTCTCCTCTCTACCAAACAGCAAGGATTTTTCGAAAAATATCTTATTATGAGTTCAGTACCGTCACAAACGGCACCTACCTGGTACGCCTCCATTTCTTTGCTTTCACTTCCCAAAGTAACCTATCCTCGGCTATATTCAATGTTTCGGTTCCTGGGTTCTGTTTGTTGCAAAATTTCAATGCCGAAAATAATAGCAACTCTGCTTTAGTAAAAGAGTTTTTCATGAAAATCACAGACCGCAGCTTCAAAATCATTTTCACACCACTGGCACAATCATTTGCGTTTGTGAATGCTATAGAACTCTTCGTACTCCCTCTCTATTTGATCTCCGATCTTGTCTCAAGTTTCACTTACGGCACTCAGAGAAACTTAACTAGTTACAATGGCTTGCTCTCGCATGCGTTGGAGACCAAACACAGGCTTAACGTTGGTGGAGAAAATGTCACAAGGAGCAACGATAATTTATTGAGAAACTGGTTTCCAGATGATAGTTATCTCAGTAATCCAGGAAACGCGGAGAATAGTTCATACTCGGGTCAAATTAATGCAGGAGGCTCTAACCTTTTAAACATAACTTGGGGTCTTCCTGTGGACAATAATACATATCATCTTGTTCGGCTTCATTTCTGTGACTTATGGAATATACAGCCTGGTCTTACAACCTTCAATCTGTCCATTTATGACAGCCTTGTTACGGTGGTCAATATGAATGACCCAAACGTGTATAACCAGTTGCCTGCACCTTATTATTATGATATTGTGGTTCACTCTGATGATTCTGGGCTCATAAAGATCAGTGTAGAACCTAATTTAGCATCTGCTCATGGACCGGATGCTTTTCTAAACGGGCTTGAAATAATGAAACTGATTGATTCATCAGAAATAATTGTTCCCCTTGACGAATCCAAGCATAATCTTCTTCCAGTGGTGCTGGGTTCAGTTGCTGGAGGTTTAGTCCTGCTTTCTGTCGTGGTAGTTGGGTTTCTTTGGTGTCTTAAATTCAGGAATCAAAGGCCCATCGAAAATTCAGATTGGTTGCCAATTCCAGTCACTGCAGGAGGGAGTTCTCACAGCAGATTGACAGAGGGAACCATCCCATTTCTTGGGCTGAAAATTTCCTTTCTTGATCTTCAATCGGCAACCAATAACTTTGATGCAAAGCAGATAATTGGGAAGGGTGGTTTTGGTAACGTCTATAAAGGAGTTCTCAAGAATGGGATGAGAGTGGCTGTGAAAAGAAGTGAGCCGGGGTCAGGTCAAGGCCTTCCAGAATTTCAGACAGAGATAATGGTTTTGTCCAAGATTCGTCACAGGCACCTTGTTTCCTTAATTGGGTACTGTGACGAAAGGAATGAGATGATACTGGTTTACGAGTACATGGAAAATGGGACACTCAGAGACCATTTGTACAACACGAATTTGCCAAGCTTGTCTTGGAAGCAAAGGCTTGAAATTTGTATTGGAGCTGCCAGGGGTCTTCATTACCTTCACAAAGGAGCTACTGGGGGTGTCATTCACCGTGATGTAAAGTCCACCAACATATTGCTTGATGAGAACCATGTGGCTAAAGTTGCTGACTTTGGCCTTTCAAGGTCAGGTCCTCTTGATCATCAAACATGTGTCAGCACTGGTGTTAAAGGCACTTTTGGGTATCTTGATCCTGAGTATTTCAGGTTGCAACTGCTGACAGAAAAATCTGATGTCTATTCATTTGGGGTAGTTCTTCTGGAAGTGTTATGTGCAAGACCAGCCATTGACCCATCACTTCCAAGGGAGCAGGTGAACTTGGCTGAATTGGGATTGTTTTGCAAAAACAACGGAATGCTGGAAGTGATCATTGATCCTTCCATCAAGGGCCAAATAGATCAAAACTCTCTCAGAAAATTTAGTGAGACAGTAGAAAAATGCATAGAAGACAATGGTTGTGATAGGCCAACCATGGGTGATGTGTTGTGGGACTTGGAGTATGCGCTGCAGCTTCAGCGAGGTGCAATACATAGAGAGCCACATGGGGATAGTTCTAGCAGTGCTTCTGCATCACTTCAATTGCCCAATGTTCGGCGTTTTCCTTCACTCTCCACACGAAGTGAAGTGGATGACTTGTCCTTTGTGAGGGGTAATGAATCCGATAGTGCAGCGGATTCCGTTTTCTCTCGGTTGAAAATTGATGACGCCAGATAG 2415 0.4277 MATIQLLRIQNTLSVHVFLLQFSSLLFPSLGYTLPDKYFINCGSDVNVTESGHVYVGESNPIVRFSSSNKESTQSSVPSPLYQTARIFRKISYYEFSTVTNGTYLVRLHFFAFTSQSNLSSAIFNVSVPGFCLLQNFNAENNSNSALVKEFFMKITDRSFKIIFTPLAQSFAFVNAIELFVLPLYLISDLVSSFTYGTQRNLTSYNGLLSHALETKHRLNVGGENVTRSNDNLLRNWFPDDSYLSNPGNAENSSYSGQINAGGSNLLNITWGLPVDNNTYHLVRLHFCDLWNIQPGLTTFNLSIYDSLVTVVNMNDPNVYNQLPAPYYYDIVVHSDDSGLIKISVEPNLASAHGPDAFLNGLEIMKLIDSSEIIVPLDESKHNLLPVVLGSVAGGLVLLSVVVVGFLWCLKFRNQRPIENSDWLPIPVTAGGSSHSRLTEGTIPFLGLKISFLDLQSATNNFDAKQIIGKGGFGNVYKGVLKNGMRVAVKRSEPGSGQGLPEFQTEIMVLSKIRHRHLVSLIGYCDERNEMILVYEYMENGTLRDHLYNTNLPSLSWKQRLEICIGAARGLHYLHKGATGGVIHRDVKSTNILLDENHVAKVADFGLSRSGPLDHQTCVSTGVKGTFGYLDPEYFRLQLLTEKSDVYSFGVVLLEVLCARPAIDPSLPREQVNLAELGLFCKNNGMLEVIIDPSIKGQIDQNSLRKFSETVEKCIEDNGCDRPTMGDVLWDLEYALQLQRGAIHREPHGDSSSSASASLQLPNVRRFPSLSTRSEVDDLSFVRGNESDSAADSVFSRLKIDDAR 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3974g00043 804 Pfam Protein tyrosine and serine/threonine kinase 465 729 IPR001245 GO:0004672|GO:0006468
Gabi3974g00043 804 Gene3D - 37 181 - -
Gabi3974g00043 804 Gene3D - 212 368 - -
Gabi3974g00043 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Gabi3974g00043 804 FunFam Putative receptor-like protein kinase 37 183 - -
Gabi3974g00043 804 FunFam receptor-like protein kinase FERONIA 430 537 - -
Gabi3974g00043 804 ProSitePatterns Protein kinases ATP-binding region signature. 468 490 IPR017441 GO:0005524
Gabi3974g00043 804 ProSiteProfiles Protein kinase domain profile. 462 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3974g00043 804 Gene3D Transferase(Phosphotransferase) domain 1 538 750 - -
Gabi3974g00043 804 Pfam Malectin-like domain 40 366 IPR024788 -
Gabi3974g00043 804 FunFam Receptor-like protein kinase FERONIA 538 754 - -
Gabi3974g00043 804 SMART serkin_6 462 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3974g00043 804 PANTHER OS07G0166700 PROTEIN 449 739 IPR045272 GO:0004714|GO:0006468
Gabi3974g00043 804 SUPERFAMILY Protein kinase-like (PK-like) 442 733 IPR011009 -
Gabi3974g00043 804 CDD STKc_IRAK 468 733 - -
Gabi3974g00043 804 Gene3D Phosphorylase Kinase; domain 1 433 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3974g00043 Gabi-Chr3974 613384 615976 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3974g00043 14 804 Receptor kinase-like Gene Family AT2G23200 43.463 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gabi3974g00043 Malectin_like 2.5e-21 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3974g00043 - - gmx:100789555 1014.6