Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3974g00032 ATGGAAGCAGTTCCTTACTCAATCTCATCTACCAAATTTCAATCACTTGTTATTTACACCAGAGCTACTAGAATTCGTTCCTCCAACCTCACTCTTCGCCCCGCTCCAATTTCAGTCAAACCTTTCTATTCTTCCAAATGTCTCATTCTCCATCACCACAGGCTCCGTTGTGTCGCTGAATCCACCAGTAACCACCACCACAATCACATCGATCACAACGGTCGCCACCATCACGACCACGACCATCACCATCACCATCACCATCACCACTCACACGATATCGATGATGCTAATCTTACCGGTCCTCAAAGAGCGATCATTGGTTTCGCCAAAGCCACCAGATGGATGGACTTGGCAGATATCCTTAGGGAGCACTTGCATCTATGCTGCTTCTCCGCCGCTTTGTTTGTTGCCGCCGCCATTTGCCCTTATACCTTGCCTAAGCCTCTCATCAAGCCTCTTCAAAACTCTCTCATTTTTATCGCTTTTCCTTTGGTTGGGGTTTCTGCATCACTTGATGCTCTTATTGAAATTAGCGGAGGAAAAGTGAACATCCATGTATTAATGGCAATGGCAGGCTCTGCATCAATATTCATGGGAAATTCTTTGGAAGGAGGGTTACTTCTTGCCATGTTTAATCTGGCTCATATAGCCGAGGAGTATTTCACCGGCCGTTCAATGGTTGATGTTAAAGAGCTGAAGGAAAATTATCCAGAATTCGTCCTTGTTCTGGATACCATTGATGATAAACTTCCTAATACCTTTGACTTGGCGTACAAGAGGGTTCCTGTGCATGATGTAACTGTAGGATCATATATCCTGGTCAGTGCCGGCGAGTCTGTGCCTGTAGATTGTGAACTTTTCCAAGGCAGTGCCACAATTACCATCGAGCACTTGACAGGGGAAGTCAAACCTTTGGAGACCAAAGTTGGAGATAGAATTCCTGGTGGTGCAAGGAACTTAGATGGGAGGATAATTGTGAAGGTGACAAAGACATGGAAGGAATCAACTCTCAACAGAATTGTGCAGTTGACTGAAGAAGCACAGCTGAATAAACCTAAACTTCAAAGGTGGCTGGACGAATTTGGTGAACGTTACAGCAAAGTTGTTGTGGTGTTATCAATTGCTATTGCTGTTATTGGGCCACTTGTATTTAAGTGGCCATTCATTAGTACATCAGCTTGCAGAGGTTCAGTTTACAGAGCCCTAGGGCTCATGGTGGCAGCATCACCATGTGCCTTGGCTGTGGCCCCATTGGCATATGCTACAGCAATCAGCTCCTGTGCAAGAAAGGGGATATTACTCAAGGGTGGACATGTTCTGGATGCTCTAGCTTCTTGCCATACTATTGCATTTGACAAAACAGGGACATTAACGACTGGTGGACTTGTATTCAAGGCAATTGAGCCCATTTATGGTCATCACGTTAGAAACAATGAATCGAACATTTCTTCCTGTTGCATTCCCACCTGTGAAAAAGAAGCTCTTGCTGTTGCTGCGGCTATGGAAAAGGGTACTACTCACCCCATTGGAAGGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCTGTTTCTGTTGAAAGTTTTGAGTACTTTCCCGGTAAAGGCCTTACTGCTACTGTTAATAGTATTGAGTCAGGAACAGGAGGTGCTGAACTATTGAAAGCATCACTTGGATCAGTAGATTTCATCACTTCATTTTGTCAATCTGAAGATGAGTCAAAAAAGATCAAGGAAGCTGTTAATACATCTTCTTATGGAAGTGAATTTATTCAAGCTGCCCTTTCAGTTAATCAGAAGGTAACATTGATTCACTTAGAGGACAGGCCTCGTCCTGGGGTTTTTAATGTTATTCAAGAATTGCAAAATGAAGCGAAGTTTCGTGTGATGATGTTAACTGGGGATCATGAGTTTAGTGCAAGGAGAGTTGCAAATGCTGTGGGCATCAATGAGTTTTATTGCAACCTGAAGCCTGAAGAAAAGCTGAGTCATGTAAAGGACATCTCAAGAGAAATGGGCGGAGGCTTAATTATGGTTGGTGAAGGTATCAATGATGCCCCAGCACTTGCTGCTGCAACTGTAGGGATTGTTCTTGCTCATCGTGCTAGTGCAACTGCCATAGCTGTTGCAGATGTGTTGTTGCTTCGAGAAAACATTTCTGCAGTGCCATTTTGTATTGCCAAGTCTCGCCAAACAACTTCACTGATTAAACAAAATGTGGCTCTGGCATTGTCGTGCATTGTCATGGCTTCTCTTCCATCAGTTTTGGGATTTCTGCCATTGTGGTTAACGGTTCTTTTGCATGAAGGTGGAACCCTGCTTGTTTGTCTCAATTCGATACGTGCTTTAAATGAACCATCTTGGTCTTGGAAGCAGGATATGTTGCACTTGATTATCGAGGTTAAATCCAAACTTCTTTCTCTAAGGACAAATATTACGGGCTCAAGCAGCATCACAACTGCGAATTTGTAA 2478 0.4379 MEAVPYSISSTKFQSLVIYTRATRIRSSNLTLRPAPISVKPFYSSKCLILHHHRLRCVAESTSNHHHNHIDHNGRHHHDHDHHHHHHHHHSHDIDDANLTGPQRAIIGFAKATRWMDLADILREHLHLCCFSAALFVAAAICPYTLPKPLIKPLQNSLIFIAFPLVGVSASLDALIEISGGKVNIHVLMAMAGSASIFMGNSLEGGLLLAMFNLAHIAEEYFTGRSMVDVKELKENYPEFVLVLDTIDDKLPNTFDLAYKRVPVHDVTVGSYILVSAGESVPVDCELFQGSATITIEHLTGEVKPLETKVGDRIPGGARNLDGRIIVKVTKTWKESTLNRIVQLTEEAQLNKPKLQRWLDEFGERYSKVVVVLSIAIAVIGPLVFKWPFISTSACRGSVYRALGLMVAASPCALAVAPLAYATAISSCARKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLVFKAIEPIYGHHVRNNESNISSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSVSVESFEYFPGKGLTATVNSIESGTGGAELLKASLGSVDFITSFCQSEDESKKIKEAVNTSSYGSEFIQAALSVNQKVTLIHLEDRPRPGVFNVIQELQNEAKFRVMMLTGDHEFSARRVANAVGINEFYCNLKPEEKLSHVKDISREMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALSCIVMASLPSVLGFLPLWLTVLLHEGGTLLVCLNSIRALNEPSWSWKQDMLHLIIEVKSKLLSLRTNITGSSSITTANL 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3974g00032 825 MobiDBLite consensus disorder prediction 69 90 - -
Gabi3974g00032 825 Pfam haloacid dehalogenase-like hydrolase 449 694 - -
Gabi3974g00032 825 Pfam E1-E2 ATPase 259 431 - -
Gabi3974g00032 825 SUPERFAMILY Calcium ATPase, transmembrane domain M 188 766 IPR023298 -
Gabi3974g00032 825 SFLD p-type atpase 433 734 IPR044492 -
Gabi3974g00032 825 CDD P-type_ATPase_HM 127 783 - -
Gabi3974g00032 825 Gene3D - 462 612 IPR023299 GO:0000166
Gabi3974g00032 825 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Gabi3974g00032 825 Gene3D - 444 732 IPR023214 -
Gabi3974g00032 825 PRINTS P-type cation-transporting ATPase superfamily signature 705 717 - -
Gabi3974g00032 825 PRINTS P-type cation-transporting ATPase superfamily signature 681 700 - -
Gabi3974g00032 825 PRINTS P-type cation-transporting ATPase superfamily signature 95 109 - -
Gabi3974g00032 825 PRINTS P-type cation-transporting ATPase superfamily signature 604 615 - -
Gabi3974g00032 825 PRINTS P-type cation-transporting ATPase superfamily signature 627 637 - -
Gabi3974g00032 825 Gene3D - 225 349 - -
Gabi3974g00032 825 SUPERFAMILY HAD-like 449 781 IPR036412 -
Gabi3974g00032 825 SUPERFAMILY Calcium ATPase, transduction domain A 259 344 IPR008250 -
Gabi3974g00032 825 MobiDBLite consensus disorder prediction 65 95 - -
Gabi3974g00032 825 SFLD C1.7: P-type atpase like 433 734 - -
Gabi3974g00032 825 NCBIfam heavy metal translocating P-type ATPase 185 783 IPR027256 GO:0006812|GO:0016020|GO:0019829
Gabi3974g00032 825 NCBIfam HAD-IC family P-type ATPase 259 475 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3974g00032 825 NCBIfam HAD-IC family P-type ATPase 584 761 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3974g00032 825 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 37 823 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3974g00032 Gabi-Chr3974 433580 474905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3974g00032 85 806 Primary Pumps ATPases AT4G37270 75.485 0.0 1087
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3974g00032 K01534 - gmx:100776309 1369.37