Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3974g00030 ATGGATCGGATCAAGGGGCCGTGGAGCCCCGAAGAGGACGAGGCCCTGCAGAAGCTGGTGGAGAGGCATGGGCCCAGGAACTGGACGTTGATCAGCAGGTCGATTCCGGGCCGGTCCGGAAAGTCATGCAGGCTCCGATGGTGCAACCAGCTGTCGCCCCAAGTTGAGCACCGGGCCTTCACGCCCGAAGAGGACGAAACCATAATCAGGGCCCATGCCCGGTTCGGCAATAAGTGGGCCACCATAGCCCGGCTCCTCTCCGGTCGAACCGATAACGCTATCAAGAACCACTGGAACTCAACCCTCAAGCGCAAGTGCGTAATGATCATGGACGACCAAACCGCCGCCGGTGGTGGTTTCAGCCCGCGGCCGCTGAAGAGGTCGGTGAGTGCCGGAGCGGCGCTGCCGCCTGGTAGCCCCTCCGGATCGGACGTGAGCGAGTCGAGCGTTCCCGTCGCGGTGTCTCCTTCGCACGTGTTTCGGCCCGTGCCGGTTCGACCGCCGCCTGTGGAAACGACGTCGTCCTCCGATGACGACGGTCCTCCGACATCGTTGTCGCTGTCACTACCGGGGGTGGACTCGTTGGAAGTTTCGAATCGGGTGACGGCGGCGGGGACTAATTCCGTGCCTTTGATGCCAGTAACCGACGTAACGGCTCAGGCTACGCCGGCGGCGCAACTGCAAACTCAAGGGATTGGGTTGGGGGCAGTGAATTTGAATGGGGAGTTGATGGCGGTGATGCATGAGATGATAAAGATGGAGGTGAGGAGTTATATGGAGCAGCAAAATGGGATGTGTTTTCAGGGTGTTGATGGGTTTAGGAACATGTCGGTGAAGCGAATTGGGATTAACAGGGTCGATTCGTGA 867 0.5986 MDRIKGPWSPEEDEALQKLVERHGPRNWTLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCVMIMDDQTAAGGGFSPRPLKRSVSAGAALPPGSPSGSDVSESSVPVAVSPSHVFRPVPVRPPPVETTSSSDDDGPPTSLSLSLPGVDSLEVSNRVTAAGTNSVPLMPVTDVTAQATPAAQLQTQGIGLGAVNLNGELMAVMHEMIKMEVRSYMEQQNGMCFQGVDGFRNMSVKRIGINRVDS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3974g00030 288 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Gabi3974g00030 288 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Gabi3974g00030 288 MobiDBLite consensus disorder prediction 170 191 - -
Gabi3974g00030 288 PANTHER MYB PROTEIN-RELATED 5 172 - -
Gabi3974g00030 288 Pfam Myb-like DNA-binding domain 8 66 - -
Gabi3974g00030 288 CDD SANT 7 49 IPR001005 -
Gabi3974g00030 288 FunFam Transcription factor MYB44 59 105 - -
Gabi3974g00030 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Gabi3974g00030 288 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Gabi3974g00030 288 FunFam MYB transcription factor 5 56 - -
Gabi3974g00030 288 CDD SANT 59 102 IPR001005 -
Gabi3974g00030 288 Gene3D - 4 56 - -
Gabi3974g00030 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Gabi3974g00030 288 Gene3D - 58 116 - -
Gabi3974g00030 288 SMART sant 56 104 IPR001005 -
Gabi3974g00030 288 SMART sant 4 53 IPR001005 -
Gabi3974g00030 288 MobiDBLite consensus disorder prediction 117 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3974g00030 Gabi-Chr3974 405483 416599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3974g00030 1 287 MYB Transcription Factor Family AT4G37260 51.385 3.68e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3974g00030 Myb_DNA-bind_6 2.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3974g00030 K09422 - gmx:100806145 352.443