Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3974g00021 ATGGACGAGAAGATAGACACTGCAGACAAAAAGGTGCTGGTTGATATTGTAAAATTGTCACAGAAAAGAGGCTTGAAGGGTAAACAGGGAGACTGGAAAGAATTCTTGAACAGTTATGATAAAAAGTTTGGGGCAGGTTTGAGTGATCCAGCAAAGAGGTCCCATGAGATTTTGGCTGCATTTCTAAAGACATTCTCGAAGGAAGATGATTTGAAGTTTTTTGCTAATATCATGCGGCATCATTCAAATCAAGACACACTCGAGCAACTGAAAGATAAATCTCATGATTCCCCTGAGCAGAGGCTAGTCCAAGTTACTCTCCAGCACCCATTATATCCATTGGATTATTCTTCATCAATTGATGAGGGGTGGGTAATTATAAACCTTAAAAAGAAACCCAAGGTGATGAAGTGTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGAACTGAAGCATTAGTCAAAGTCTGTGTGGTAGACCACAATTTAGAGGTCAAACTAAATGAACTTGTAAAACCCGACAAAGCAATTGCAGACTACAGAACAGAAATTACTGGTGTCTCTTCTCAAGATCTAGAGCCAGTGTCATGCTCCTTGGCCGATATACAGAAATCCATGAAGAAGTTGTTGTCAAATGGAACCATATTAGTGGGACACAGTTTACATAACGATCTACGTGTGCTGAAGCTTGATCATGTTAGAGTGGTTGACACTTCATATATCTTCCAATCCACAGATGGATCTATTCACAGGAGACCTTCTTTGAATAGTTTATGTCAGGCTGTGTTAGGCTATGAAGTTCGGGAAAATGGTGCTCCACATAATTGTCTAGATGATGCATGTGCAGCAATGAAACTTGCTCTTGCAAAGATCAAGCACGGTGTTGATACAGCTCTTCCGTTGGTTCAGGAGCATGTTTCAGAAATTGAGATGGCGAAGCTTCTCCTTCACAGAATACCAACAACGGTGAACAGTAAAACTCTACATGAAGTTGTTCCTGGAGACTTCACATTAGAACTGAAGCCTTCCAGGAAAGGTCAAGGAGAAAAATATTCTGCCTTAGCTATCTTTAAGAACCCACAAGAGGCAAATGATGCCTATGAAAACGTCCAAGGCAGCCAATTAAAGGATTCATATGGACGTCCACAGAAACTTGTCACATTTCAGCTAAGTACAGGCATGATGGCCACTCTATTTGTTCGGAAAATGGCAACAGATGAACCCCATGATCTGATTCCATGTAAGAGAGCTTCAGAATCGAATGAGGTTGTTGAAGTTTCCAAGAAAGCAAAGACGGATCCTAAAATTGAAGAGGATGCCCTGACAGGCTCCACTAAGTGTGACACTGACACCCACTTGAATGAGATCGAAGCACTGAATCAACGATTGAAGCAAAGTGATTTGGAGATTGAATCATTGAGAGAACAGTTGAGACAAAAGGATTTTGAAATCTCCATGCTGCATAAAATGGTATCCTCATTAAGAAAGCGAACAAACAAAACCTAG 1521 0.4076 MDEKIDTADKKVLVDIVKLSQKRGLKGKQGDWKEFLNSYDKKFGAGLSDPAKRSHEILAAFLKTFSKEDDLKFFANIMRHHSNQDTLEQLKDKSHDSPEQRLVQVTLQHPLYPLDYSSSIDEGWVIINLKKKPKVMKCTAMVAVDCEMVLCEDGTEALVKVCVVDHNLEVKLNELVKPDKAIADYRTEITGVSSQDLEPVSCSLADIQKSMKKLLSNGTILVGHSLHNDLRVLKLDHVRVVDTSYIFQSTDGSIHRRPSLNSLCQAVLGYEVRENGAPHNCLDDACAAMKLALAKIKHGVDTALPLVQEHVSEIEMAKLLLHRIPTTVNSKTLHEVVPGDFTLELKPSRKGQGEKYSALAIFKNPQEANDAYENVQGSQLKDSYGRPQKLVTFQLSTGMMATLFVRKMATDEPHDLIPCKRASESNEVVEVSKKAKTDPKIEEDALTGSTKCDTDTHLNEIEALNQRLKQSDLEIESLREQLRQKDFEISMLHKMVSSLRKRTNKT 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3974g00021 506 Pfam Exonuclease 142 291 IPR013520 -
Gabi3974g00021 506 FunFam Small RNA degrading nuclease 3 136 310 - -
Gabi3974g00021 506 SUPERFAMILY Ribonuclease H-like 141 297 IPR012337 -
Gabi3974g00021 506 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 305 IPR047021 GO:0004527
Gabi3974g00021 506 Coils Coil 461 488 - -
Gabi3974g00021 506 Gene3D - 137 310 IPR036397 GO:0003676
Gabi3974g00021 506 SMART exoiiiendus 140 301 IPR013520 -
Gabi3974g00021 506 CDD REX1_like 142 293 IPR034922 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3974g00021 Gabi-Chr3974 250035 260513 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3974g00021 114 309 C2H2 Transcription Factor Family AT3G27970 28.037 3.04e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3974g00021 K14570 - gmx:100785565 793.497