Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3974g00004 ATGGAAGGTGATGGTGAAGGAGGAACCACAAGGAAGAGAGGGACAGAGTCAGAGGGTCAAACAAGGTACAAAGGTATCAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAGATTCGAGAACCCAACAAGCGTTCTCGGATTTGGCTCGGTTCTTATTCCACTCCCGTTGCTGCGGCGCGTGCTTACGACACCGCCCTCTTCTATCTCCGGGGACCATCCGCTCGCCTTAACTTCCCCGAGCTTCTAGCCGGAGAAGGTGGCGCTACCAGTTGCGACATGTCCGCAGCTTCTGTTAGGAAGAAAGCCACGGAGGTCGGTGCCAGAGTCGATGCCCTCCAGGCCACCCTCCACCGCCAGCTTCCACATGCTTCCGCCACACGCGCCGCCGCCGCTGGGGAATTTGCGGTACGGGTTGACCTTAATAAGATACCCGAGCCCGAGAATTCGGATTGTGACTGGGACATGGATTAG 471 0.5754 MEGDGEGGTTRKRGTESEGQTRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTALFYLRGPSARLNFPELLAGEGGATSCDMSAASVRKKATEVGARVDALQATLHRQLPHASATRAAAAGEFAVRVDLNKIPEPENSDCDWDMD 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3974g00004 156 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Gabi3974g00004 156 CDD AP2 21 81 IPR001471 GO:0003700|GO:0006355
Gabi3974g00004 156 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Gabi3974g00004 156 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Gabi3974g00004 156 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Gabi3974g00004 156 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Gabi3974g00004 156 MobiDBLite consensus disorder prediction 1 23 - -
Gabi3974g00004 156 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Gabi3974g00004 156 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 150 - -
Gabi3974g00004 156 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Gabi3974g00004 156 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3974g00004 Gabi-Chr3974 47172 47939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3974g00004 14 154 AP2-EREBP Transcription Factor Family AT2G23340 62.745 2.94e-57 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3974g00004 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3974g00004 K09286 - gmx:100784157 219.935