Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi396g00005 ATGGGTTCATTTTCCGGCACTTGTGAAATTGTTGAAGCAAGGGAAGACCTAAATGCAGGGAAAGATACTGGGATACATCAGTCCACTTCTGGATATAGTGTGGCTGAGAAAAATCAGAAGCTTCCTGTGTTGAAACTGGGATTCAAGGATAATATAGATGATGATATTAATAAGCTGTTTGAATCATTTACTCTTAAATCTTCATCAAGGGATTTGGGATTTTTACAAGATGGGACAAGCCCTAAGATGAAAAGTGCACTAAAAAAGCCAATCACAGTGGGTGTTCCTCGGTCCCCGCGAGTTGGGACTTCTGAGCCAGTGACTTTGAAGCAGGCATTAAGAGACCTATGTATATCTAAGGCATCAGAAATGGCTGCAATGAAAAGATTATCAAAGTCAACAGCTTCTCCTAGAATATCCGAGGTTGGGAAAATACAGACATTGTACAATTCAGTTGTAGCTGAAGATAGACGATCTGGACCTTCTAATGGTGAGAGTAAAGGGAGAACAATTGAGATATCTCTAGTGTCAGATGAAAGCAATTCTCTTGCCTTGGATAAAGCATCCCAGTCTCATCAAACTGCCAAAAGCAATCCATTGAGCCAAAATGTTCATTCTTCCATTGCAACTACACAAAATGATACTGGGGCATGTTCATCAAGTAAAGTTGAGGTTCCATCACAGCCATTGGAGTCTGCTCAAATAGAAAAACAAACATCTACATCTTCAACATCTATTTGTAACACCAATGGAAGTATATTAGAGTTGCCTGAAAATGCTTCTTCTCCTAAAAAATTAGGAAATAAAGCACCTGTGTCAAAGAATGGGCGCAAAGGTAGGTTACAAACAGTGTCTTCCTCATCTACTTCAGTAAATGGCAATAGAGTGTGCAAACTGTCACGCAATGCTCCCCGAACAGTTAAATCGGTCATCAAGAACAAGAATTTGGGTAAGAAGAAACTAAATCAGGTTTCAATTTCTTCTTTAGTTGATCCTACACCCAATGAAGTAAATAACATGTCAGTTCCTGGTACAACTCAACTCGTTTGCGAGAGATGTTGGTGTGCTATAGAAAATACAAGCAAAGAAAACAGCAAAGGTATTATAGAATTGGACTCTATCAGTCCTGGAGATGGAGTAAACTCGAGTAATGTGCACCCTCAGTCAGCATCAACTGGCTGTAATAGCGGCAGAGAAGTTACGAAAGTTAAAAAGAACACCAGATTGAAAGAGCAACTTGAATTTTCACAAAGTTCAAAGAGTAGCCAAGGTGACCACAGTAGCAGTACAAGTACCAGTGATGAGAGCAATGTCAGTGGTTCTAGTTGTGGTAATAGACCTCACATGTCAAAGGATGTTAGATGGGAAGCCATACGACATGCTCAAATGCAGCATGGAGTCTTGGGCTTGAGACACTTCAATCTTTTGAAGAAACTTGGTTGTGGAGACATTGGGACTGTATATCTTGCTGAATTAATTGGCACAAATTGCTTGTTTGCTATTAAGGTCATGGACAATGAATTTTTGGCAAGAAGGAAGAAGATGCCTAGGGCTCAAACTGAAAGAGAAATATTAAGGATGCTGGATCATCCTTTTCTTCCAACACTGTATGTGCAGTTTACATCAGATAACCTGTCATGTCTGGTCATGGAGTATTGTCCAGGTGGAGATCTTCATGTTCTACGGCAGAAACAACTTGGTAGAAGTTTTTCAGAGCCAGCAGCAAGGTTTTATGTTGCTGAAGTCCTTCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTGTTTACCGTGATTTGAAACCTGAAAACATTCTTGTTCGAGAAGACGGCCACATTATGCTCACGGATTTTGACCTGTCACTGAGGTGTGATGTTAGCCCGACTCTTCTGAAATCATCTGATGTGGATCCTGCTAAGATTTCTGGTCCTTGTGCACAATCGAGTTGCATTGAGCCATTCTGTATTGAGCCATCCTGTCAAGTTCCGTGCTTCAGCCCTAGATTCTTACCTACTGCTGCAAAAGCAAGGAAATTAAAAGCTGATCTTGCTGCTCAGATCAGATCATTGCCGCAACTCGTGGCTGAGCCTACAGATGCAAGGTCAAATTCATTTGTTGGTACTCATGAATACCTAGCGCCTGAGATCATCCAAGGAGAGGGACATGGAGCTGCAGTTGACTGGTGGACATTTGGTGTTTTTCTTTATGAGCTTCTATATGGTAGAACACCCTTTAAAGGATCTAATAATGAAGAAACATTAGCCAACGTGGTGATGCAAAGTCTCAGATTCCCTGACAGCCCATTTGTTAGTTTCCAAGCGAGGGATCTCATAAGAGGGTTGTTGGTTAAAGAGCCTGAAAACCGTTTGGGGTCTGAGAAAGGGGCTGCAGAGATTAAACAGCATCCCTTCTTCGAGGGCCTTAATTGGGCCTTAATACGTTGTGCTATCCCACCAGAACTTCCAGACTTTTGTGAGTTTGGAGTCTCAGACATGACCTCACAGCCACAGGGCAAGGGTGGCAAGTATTTAGAGTGTAAAACAACTGGGGAGCAAGTGGAATTTGAGTTGTTTTGA 2574 0.4169 MGSFSGTCEIVEAREDLNAGKDTGIHQSTSGYSVAEKNQKLPVLKLGFKDNIDDDINKLFESFTLKSSSRDLGFLQDGTSPKMKSALKKPITVGVPRSPRVGTSEPVTLKQALRDLCISKASEMAAMKRLSKSTASPRISEVGKIQTLYNSVVAEDRRSGPSNGESKGRTIEISLVSDESNSLALDKASQSHQTAKSNPLSQNVHSSIATTQNDTGACSSSKVEVPSQPLESAQIEKQTSTSSTSICNTNGSILELPENASSPKKLGNKAPVSKNGRKGRLQTVSSSSTSVNGNRVCKLSRNAPRTVKSVIKNKNLGKKKLNQVSISSLVDPTPNEVNNMSVPGTTQLVCERCWCAIENTSKENSKGIIELDSISPGDGVNSSNVHPQSASTGCNSGREVTKVKKNTRLKEQLEFSQSSKSSQGDHSSSTSTSDESNVSGSSCGNRPHMSKDVRWEAIRHAQMQHGVLGLRHFNLLKKLGCGDIGTVYLAELIGTNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRSFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCDVSPTLLKSSDVDPAKISGPCAQSSCIEPFCIEPSCQVPCFSPRFLPTAAKARKLKADLAAQIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIQGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVMQSLRFPDSPFVSFQARDLIRGLLVKEPENRLGSEKGAAEIKQHPFFEGLNWALIRCAIPPELPDFCEFGVSDMTSQPQGKGGKYLECKTTGEQVEFELF 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi396g00005 857 Gene3D Transferase(Phosphotransferase) domain 1 697 813 - -
Gabi396g00005 857 MobiDBLite consensus disorder prediction 376 400 - -
Gabi396g00005 857 ProSitePatterns Serine/Threonine protein kinases active-site signature. 594 606 IPR008271 GO:0004672|GO:0006468
Gabi396g00005 857 MobiDBLite consensus disorder prediction 278 294 - -
Gabi396g00005 857 MobiDBLite consensus disorder prediction 412 446 - -
Gabi396g00005 857 FunFam Serine/threonine-protein kinase D6PK-like 471 556 - -
Gabi396g00005 857 SMART serkin_6 473 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi396g00005 857 ProSiteProfiles Protein kinase domain profile. 473 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi396g00005 857 FunFam serine/threonine-protein kinase D6PK-like 699 822 - -
Gabi396g00005 857 MobiDBLite consensus disorder prediction 183 294 - -
Gabi396g00005 857 MobiDBLite consensus disorder prediction 368 447 - -
Gabi396g00005 857 SUPERFAMILY Protein kinase-like (PK-like) 448 826 IPR011009 -
Gabi396g00005 857 Gene3D Transferase(Phosphotransferase) domain 1 553 621 - -
Gabi396g00005 857 Gene3D Phosphorylase Kinase; domain 1 471 552 - -
Gabi396g00005 857 MobiDBLite consensus disorder prediction 183 257 - -
Gabi396g00005 857 CDD STKc_phototropin_like 471 822 - -
Gabi396g00005 857 PANTHER FLIPPASE KINASE 1-RELATED 207 826 - -
Gabi396g00005 857 Pfam Protein kinase domain 474 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi396g00005 857 Pfam Protein kinase domain 701 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi396g00005 857 FunFam serine/threonine-protein kinase D6PK-like 557 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi396g00005 Gabi-Chr396 84824 90457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi396g00005 1 857 AGC Kinase Gene Family AT2G36350 52.088 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gabi396g00005 Pkinase 4.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi396g00005 - - gmx:100813470 1390.56