Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3968g00055 ATGCTTGCACTCTATTTCCGATCATGCTTCTTTCCTCCACCATTCTTTCGCAGTAGTGTTTGTGTTTCCTCTCTCTTCCCTCTCTCTTTCTCTCTCTCCTCAACCCTTCGCCCCCTTACCCTTACAATGTCCAAGAAACCACCCTCTGCTTTCGATGCCCTCATGTCCGGCGCACGCGCCGCCGCTTCCGCCGCCAAGAAGAATCCCCTACAACCATCCTCATCCCCCAAGAAAAGAAAATCACCTCACCCCGCTTCCATCCAAAACCCTAACAACCTCAACCCCCCCGATTCCGAAGCCGTTGATGAATCCAACAAACCGAGAAAATCACCTCATTCCACTTCCATCCAAAACCCTAGCAACCTCAAAACCCCCGAGTCTGCAACCGTTGAAGAATCCAAGAAACCGCAGGAAACAGCCAAGCTGGAAATAACCAAGAAACCTCAGGAGAAGATCGCCGAACTGAAGAAGCGAGTTCCGCAGCTGAAGAAGAAGCCGTCCGAGTTCGATCCGAGCTCGGTGGCTTGCTGGGAGAAGGGCGAACCTGTGCCGTTCCTGTTCCTCAGCTTGGCGTTCGACATGATTGCTGAAGAGACGGGAAGGATTGTGATAACGGATATAGTGTGCAATCTGTTGAGGACTGTGATATACGCCACGCCGGAGGATCTCGTGCGCGTTGTTTATCTCTCCGCGAATAAGATTGCTCCCGCGCATGAAGGGTTGGAATTGGGAATTGGCGATGCTTCCATTATCAAGGCGCTTGCCGAGGCGTGTGGAAGGACTGAGCCAGAGATTAAGAATCTGAATAAGAAAAAAGGTGATTTGGGCTTGGTTGCCAAAGAGTGCCGTTCTTCTCAGACTATGATGCGGAAGCCTGATGCATTGACTATTAGGAAGGTTTTCAACACCTTCCGCCTTATTGCCAAGGAATCTGGAAAAGATAGTCAAGAGAAGAAAAAGAATCATATCAAGGCACTTCTTGTTGCTGCTACTGACTGTGAACCTCTATATCTAATCCGTTTGCTACAGACAAAGTTGCGAATTGGGTATGCTGAACAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTATACACTGAAGAGAATTCTAAACCGCCTCCTAAAATTCAGTCTCCTTTAGAAGAGGCTGCAAAGATTGTGAAACAAGTTTATTCTGTTCTTCCCGACTATGACAAAATAGTTTCTGCACTGCTTAAGGATGGTGTATGGATACTTCCAAAGACATGTAATTTTACTCCTGGTGTTCCAGTTGGACCTATGCTGTCGAAAGCAACCAAGGGTGTATCTGAAATTCTAAATAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATACGATGGAGAGCGTGCTCAGATACATTACATGGAGAATGGCTCAGTTGAGGTTTACAGTAGAAATGCAGAACGGAATACTGGGAAGTATCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAAACAACTGTATCATCGTTTGTTCTTGATTGTGAACTTGTTGCATATGATCGTGCAAAACAGAAAATCCTTCCTTTCCAGGTTCTTAGTACTCGGGCTCGCAAAAATGTCGCTATAAGTAGTATAAAGGTTGATGTTTGCATATTTGCTTTTGATTTGTTGTATCTGAATGGCCAAGCACTTCTTCAGGAGAACCTGAAAATCCGTAGAGAGCATCTCTATGCCTCTTTTGAGGAAGAATCTGGATTTCTTCAGTTTGCAACATCAATAACATCAAATGATGTCGAGGAAATACAGAAATTTCTTGACAAAGCTGTTGATGCAAGTTGTGAGGGATTAATTATCAAAACATTAAAAGAAGATGCTACATATGAACCTTCCAAGCGATCACTCAACTGGCTAAAACTGAAGAAAGATTATCTTGACAATATAGGGGACTCACTAGATTTGGTACCTATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGAGTCTATGGTGCCTTTCTTCTTGCTTGCTATGACAACAACAAAGAAGAATTCCAAAGTATTTGTAAGATAGGAACGGGATTCTCGGATGAAGTGTTAGAAGAACGCTCAGCTAGTCTTCGTTCTAAATTGATTCCCAAGCCAAAGACATACTATCGATTTTCAGAAACAATCAATCCTGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAGGTGAAAGCTGCAGACCTGACCATTAGCCCTGTTCACCAAGCTGCAGCGGGCATAGTAGATTCGGCTAAGGGCTTATCACTTCGATTTCCACGTCTTGTTCGAGTTCGGCCTGACAAAGCTCCTGAAGAAGCCTCATCAGCTGAGCAGGTTGCTGAAATGTATAATGCTCAAAATCACAATCAAACTAACAACCAAGACGACAATGAAGATGATTGA 2397 0.4451 MLALYFRSCFFPPPFFRSSVCVSSLFPLSFSLSSTLRPLTLTMSKKPPSAFDALMSGARAAASAAKKNPLQPSSSPKKRKSPHPASIQNPNNLNPPDSEAVDESNKPRKSPHSTSIQNPSNLKTPESATVEESKKPQETAKLEITKKPQEKIAELKKRVPQLKKKPSEFDPSSVACWEKGEPVPFLFLSLAFDMIAEETGRIVITDIVCNLLRTVIYATPEDLVRVVYLSANKIAPAHEGLELGIGDASIIKALAEACGRTEPEIKNLNKKKGDLGLVAKECRSSQTMMRKPDALTIRKVFNTFRLIAKESGKDSQEKKKNHIKALLVAATDCEPLYLIRLLQTKLRIGYAEQTLLAALGQAAVYTEENSKPPPKIQSPLEEAAKIVKQVYSVLPDYDKIVSALLKDGVWILPKTCNFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYMENGSVEVYSRNAERNTGKYPDVVAAVSRLKKTTVSSFVLDCELVAYDRAKQKILPFQVLSTRARKNVAISSIKVDVCIFAFDLLYLNGQALLQENLKIRREHLYASFEEESGFLQFATSITSNDVEEIQKFLDKAVDASCEGLIIKTLKEDATYEPSKRSLNWLKLKKDYLDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNNKEEFQSICKIGTGFSDEVLEERSASLRSKLIPKPKTYYRFSETINPDVWFEASEVWEVKAADLTISPVHQAAAGIVDSAKGLSLRFPRLVRVRPDKAPEEASSAEQVAEMYNAQNHNQTNNQDDNEDD 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3968g00055 798 NCBIfam ATP-dependent DNA ligase 242 781 IPR000977 GO:0003910|GO:0005524|GO:0071897
Gabi3968g00055 798 ProSiteProfiles ATP-dependent DNA ligase family profile. 532 668 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gabi3968g00055 798 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 450 458 IPR016059 GO:0003909
Gabi3968g00055 798 Gene3D DNA ligase/mRNA capping enzyme 455 580 - -
Gabi3968g00055 798 MobiDBLite consensus disorder prediction 764 798 - -
Gabi3968g00055 798 MobiDBLite consensus disorder prediction 62 149 - -
Gabi3968g00055 798 SUPERFAMILY Nucleic acid-binding proteins 638 784 IPR012340 -
Gabi3968g00055 798 FunFam DNA ligase 635 794 - -
Gabi3968g00055 798 FunFam DNA ligase 426 632 - -
Gabi3968g00055 798 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 166 416 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gabi3968g00055 798 Pfam ATP dependent DNA ligase domain 426 630 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gabi3968g00055 798 CDD OBF_DNA_ligase_I 638 783 - -
Gabi3968g00055 798 Pfam ATP dependent DNA ligase C terminal region 655 766 IPR012309 GO:0003910|GO:0006281|GO:0006310
Gabi3968g00055 798 CDD Adenylation_DNA_ligase_I_Euk 415 633 - -
Gabi3968g00055 798 Gene3D - 436 634 - -
Gabi3968g00055 798 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 418 636 - -
Gabi3968g00055 798 MobiDBLite consensus disorder prediction 67 99 - -
Gabi3968g00055 798 MobiDBLite consensus disorder prediction 110 127 - -
Gabi3968g00055 798 FunFam DNA ligase 161 428 - -
Gabi3968g00055 798 MobiDBLite consensus disorder prediction 128 149 - -
Gabi3968g00055 798 Pfam DNA ligase N terminus 184 359 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gabi3968g00055 798 Gene3D - 635 797 IPR012340 -
Gabi3968g00055 798 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 94 797 - -
Gabi3968g00055 798 ProSitePatterns ATP-dependent DNA ligase signature 2. 604 630 IPR016059 GO:0003909
Gabi3968g00055 798 Gene3D - 160 428 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3968g00055 Gabi-Chr3968 404334 410765 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3968g00055 1 798 Core DNA Replication Machinery Family AT1G08130 64.757 0.0 1055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3968g00055 K10747 - gmx:100783155 1137.48