Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3968g00053 ATGGAAACCAAGGCAGAGGTTGTTTCATCTCCTTCTGAATCCAGCTCCATATACGTTTCTTCTATGGAACTTGGAATTGAGAATTTCGGCTGCACGCATTACAGAAGGAGATGCAAGATCAGAGCACCATGTTGTGATGAGGTTTTTGACTGTAGGCATTGCCATAACGAAGCTAAGAACTCTGAGGAGATTAATCCTATGGATCGCCATGATATCCCACGCCATGAAATTAAAAAGGTCATCTGCTCCTTGTGTGATACAGAGCAAGATGTTCAACAGTACTGCATTAACTGTGGGGTATGCATGGGCAAGTATTTTTGTGCTACATGCAAATTCTTCGATGATGATACTTCAAAGAACCAATACCATTGTGATGAATGTGGCATCTGCAGAACTGGAGGCAAGGATAACTTTTTCCATTGCAAGAGATGTGGATGTTGCTACTCCAAGGTAATGGAAGAGGGGCATCGTTGTGTAGAAAGAGCAATGCATCATAATTGCCCTGTTTGCTTTGAGTATCTATTTGATACAGTAAGAGATATTACTGTCTTACCTTGCGGGCATACTATACATTTAGAGTGTGTTAAAGAGATGGAACAACATCATAGGTTTTCATGTCCTGTTTGCTCAAAATCCATCTGTGACATGTCAAGTTTGTGGAAGAAGCTTGACCAAGTGATCGCATCAACTCCAATGCCTGAAACTTACAAAAATAAGATGGTATGGATACTCTGCAATGATTGTGGAACAAACTCCTACGTGCAATTCCACATTGTGGGGCATAAGTGTTCAAGTTGCAACTCATACAACACAAGGCAGATACAGGGAATACCTACTACCTCATACTCCTCTAGGGTGGCTGGGATAGTGAGATGA 876 0.4155 METKAEVVSSPSESSSIYVSSMELGIENFGCTHYRRRCKIRAPCCDEVFDCRHCHNEAKNSEEINPMDRHDIPRHEIKKVICSLCDTEQDVQQYCINCGVCMGKYFCATCKFFDDDTSKNQYHCDECGICRTGGKDNFFHCKRCGCCYSKVMEEGHRCVERAMHHNCPVCFEYLFDTVRDITVLPCGHTIHLECVKEMEQHHRFSCPVCSKSICDMSSLWKKLDQVIASTPMPETYKNKMVWILCNDCGTNSYVQFHIVGHKCSSCNSYNTRQIQGIPTTSYSSRVAGIVR 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3968g00053 291 ProSiteProfiles Zinc finger CHY-type profile. 24 100 IPR008913 GO:0008270
Gabi3968g00053 291 Pfam CHY zinc finger 31 112 IPR008913 GO:0008270
Gabi3968g00053 291 ProSiteProfiles Zinc finger RING-type profile. 167 210 IPR001841 -
Gabi3968g00053 291 SUPERFAMILY Zinc hairpin stack 103 160 IPR037275 -
Gabi3968g00053 291 SUPERFAMILY CHY zinc finger-like 28 102 IPR037274 GO:0008270
Gabi3968g00053 291 SUPERFAMILY RING/U-box 165 215 - -
Gabi3968g00053 291 FunFam RING finger and CHY zinc finger domain-containing protein 1 238 283 - -
Gabi3968g00053 291 Pfam Zinc-ribbon 214 272 IPR039512 -
Gabi3968g00053 291 Gene3D - 238 280 - -
Gabi3968g00053 291 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 25 275 - -
Gabi3968g00053 291 Pfam RING-type zinc-finger 167 207 IPR027370 -
Gabi3968g00053 291 ProSiteProfiles Zinc finger CTCHY-type profile. 102 166 IPR017921 -
Gabi3968g00053 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 230 IPR013083 -
Gabi3968g00053 291 SMART ring_2 167 209 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3968g00053 Gabi-Chr3968 377634 380460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3968g00053 11 275 C2H2 Transcription Factor Family AT3G18290 37.857 2.75e-56 193