Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3968g00050 ATGGACAACATGGAAGAACAATTTGTGGGTTTGTCCAACAACGATGCCACTCACATCGCAAAGGGAAAACGCACCAAAAGAATGAGGCTTTTGTCTCCTTGTGGTGTTGTTGCTGCAACCACAGTTATGACATCTAGTTGTTCAAGTGCTTCTGGTTGTGATTATGGGTCGTTTTCTTCTTATGAGAGCACTGATCAAGAAGAAGAAGACATGGCTAATTGCTTGATTCTCTTGGCTCAAGGAGGAGGAGCAACTGGAGGAGGGGATTCTAATCATCATCATCATCATCATCATCATCATCAACAGCTAGATGAAGATCATGATCATGATCATGATGGAAATAAGATGGATCAAAAGGGTAGCACTAAGATAGCTATAACCGCTACCAATACCAATACCAAAGCTGGTTTCTTTATTTATGAGTGCAAAACGTGTAACCGAACCTTTCCTTCGTTTCAAGCACTTGGTGGGCACAGGGCAAGTCACAAAAAGCCTAAAGTGAATATGGCGGAGGAAAAGAAACCACCACTTCCTCAACCACCATCACCACCGCCTTCATCACAACCACAAGTAATTACCAATCATGATATTCAATTTCAAGAAGCAGGGCAACAAACCCACATCAAAAGTTCTCTTCAATTGGGGGGGAGTCACGGTCACAAAGCTTCTACTTTCCATGGCAACAAGGCCAAGATTCATGAGTGTTCCATATGTGGCTCAGAATTCACATCAGGGCAAGCATTGGGTGGCCACATGAGGAGGCATAGGGCATCCACAAATACCACCACCACTACTCAGGTGGTAGGCATAAGTACCATCGACACTGCTACCACCACCACCACCGCAGTCAGAGTTCCACCGAGGAGTATTTTGCAATTGGATCTTAACCTTCCAGCGCCGGAAGATGATCTCCGGGAGCCCAAGTTTCAGTTTACGGCAACCAAAAATTCGATGGTGTTGTCTGCTGCTCCGGCTTTGGTGGATTGCCATTATTAG 996 0.4518 MDNMEEQFVGLSNNDATHIAKGKRTKRMRLLSPCGVVAATTVMTSSCSSASGCDYGSFSSYESTDQEEEDMANCLILLAQGGGATGGGDSNHHHHHHHHHQQLDEDHDHDHDGNKMDQKGSTKIAITATNTNTKAGFFIYECKTCNRTFPSFQALGGHRASHKKPKVNMAEEKKPPLPQPPSPPPSSQPQVITNHDIQFQEAGQQTHIKSSLQLGGSHGHKASTFHGNKAKIHECSICGSEFTSGQALGGHMRRHRASTNTTTTTQVVGISTIDTATTTTTAVRVPPRSILQLDLNLPAPEDDLREPKFQFTATKNSMVLSAAPALVDCHY 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3968g00050 331 Gene3D Classic Zinc Finger 216 280 - -
Gabi3968g00050 331 MobiDBLite consensus disorder prediction 156 191 - -
Gabi3968g00050 331 SMART c2h2final6 233 255 IPR013087 -
Gabi3968g00050 331 SMART c2h2final6 140 162 IPR013087 -
Gabi3968g00050 331 MobiDBLite consensus disorder prediction 174 188 - -
Gabi3968g00050 331 SUPERFAMILY beta-beta-alpha zinc fingers 140 255 IPR036236 -
Gabi3968g00050 331 PANTHER ZINC FINGER PROTEIN ZAT5 59 315 - -
Gabi3968g00050 331 ProSitePatterns Zinc finger C2H2 type domain signature. 235 255 IPR013087 -
Gabi3968g00050 331 ProSitePatterns Zinc finger C2H2 type domain signature. 142 162 IPR013087 -
Gabi3968g00050 331 MobiDBLite consensus disorder prediction 85 120 - -
Gabi3968g00050 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 260 IPR013087 -
Gabi3968g00050 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 167 IPR013087 -
Gabi3968g00050 331 MobiDBLite consensus disorder prediction 101 118 - -
Gabi3968g00050 331 Pfam C2H2-type zinc finger 233 257 - -
Gabi3968g00050 331 Pfam C2H2-type zinc finger 140 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3968g00050 Gabi-Chr3968 341892 343384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3968g00050 14 331 C2H2 Transcription Factor Family AT2G28200 43.976 3.32e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3968g00050 zf-C2H2_6 2.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3968g00050 - - aprc:113858527 301.982