Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3968g00040 ATGGCTATGGAGGAAGGTGATTTGGGCGGTGGTTGGTTTCTTGGTTGGGTCGAGGAGGTGGGAGGTGGTCCGGTTGTGTTATTGGGAGTGGTCTTGGCTGGCGTTGGAATTTCCCTACTACAGGTTAATTTAAGTGTTACAGTAGTGCTAGGAATTATGATACTTGGACGCCTCTTTAGAAGAAAACAAGGTCCTTCAGCCTTGGAACAAAGATTGATTGATCCTCACTCAAATCCAGAACCAGAAAATGGCTTTGGAATCCCTTTCTTCTCTTACAAGGAGCTCGAAAAAGCTACAAATAATTTCAACCGTGCCACAAAACTTGGAAAAAATGTTTACTATGGAAAACTGCAAGATGGTAGGGAAGTTGCTGTCAAGCGCCTATTATCATATGACTGTGGACATAACTTCAGGCAAGAAGAACAAAAGTTCAAGAATGAAATTGTGATCCTTAATAACATGAGCCATAGAAATCTTGTGTCCCTCTATGGCTGCACTCCATATCATGACACAGATGGGCTACTGCTTGTGTATGAATATGTTCCAAATGGGAGTCTTGCTAATCATCTCCATGGGGATTTAGCAAGGTCTACCACACTGCCGTGGCATGCCAGAATGAAAATTGCCATAGAGACAGCAAGTTCATTGGCTAAACTGCATGCTTTTGACATCATTCACTGTGAAGTGGAAACCAAAAACATTCTCCTTACCAACAGTTTCAGTGTTAAAGTTGCACACTTTGGCTTTTCATGGTTATTCCACGATATGGACCATACAGTTGTAATGGCCCCAGGTTGCTTTACCCCAGTACTTAACTTAAGTAGCAAGAGCGATGTATATTGTTTTGGAGTTGTGCTCATTGAGTTAATATCATCTAGGCCTGCTTCTGAGCATAAGTATATCATTGACTTCTCAAACCTAGCCATAAAGAAGATTTCATTTAGCAAGCTGGTAGATCCTTCTCTTGGTTTTGATTCAGACAAGGAGGTTAAGACCATGATAGTTTCAGTGGTAAAATTAGCTTTTCAATGTTTGCAATGGGAAAAGAAATTGAGACCTTCCATGGATGATGTTTTGAAGGAACTCATGAGAAATTGA 1098 0.4089 MAMEEGDLGGGWFLGWVEEVGGGPVVLLGVVLAGVGISLLQVNLSVTVVLGIMILGRLFRRKQGPSALEQRLIDPHSNPEPENGFGIPFFSYKELEKATNNFNRATKLGKNVYYGKLQDGREVAVKRLLSYDCGHNFRQEEQKFKNEIVILNNMSHRNLVSLYGCTPYHDTDGLLLVYEYVPNGSLANHLHGDLARSTTLPWHARMKIAIETASSLAKLHAFDIIHCEVETKNILLTNSFSVKVAHFGFSWLFHDMDHTVVMAPGCFTPVLNLSSKSDVYCFGVVLIELISSRPASEHKYIIDFSNLAIKKISFSKLVDPSLGFDSDKEVKTMIVSVVKLAFQCLQWEKKLRPSMDDVLKELMRN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3968g00040 365 Gene3D Phosphorylase Kinase; domain 1 77 180 - -
Gabi3968g00040 365 Pfam Protein tyrosine and serine/threonine kinase 112 362 IPR001245 GO:0004672|GO:0006468
Gabi3968g00040 365 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 47 364 IPR044652 GO:0004672
Gabi3968g00040 365 Gene3D Transferase(Phosphotransferase) domain 1 181 365 - -
Gabi3968g00040 365 SUPERFAMILY Protein kinase-like (PK-like) 81 362 IPR011009 -
Gabi3968g00040 365 ProSiteProfiles Protein kinase domain profile. 44 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3968g00040 Gabi-Chr3968 258138 265232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3968g00040 34 362 Receptor kinase-like Gene Family AT1G25390 46.439 1.35e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi3968g00040 PK_Tyr_Ser-Thr 3.9e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3968g00040 - - psat:127098519 347.821